Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MKY51_RS17890 Genome accession   NZ_CP150231
Coordinates   3548412..3548969 (-) Length   185 a.a.
NCBI ID   WP_339174560.1    Uniprot ID   -
Organism   Solibacillus sp. FSL R5-0691     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3543412..3553969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY51_RS17865 (MKY51_17865) rbsD 3544194..3544583 (+) 390 WP_339174553.1 D-ribose pyranase -
  MKY51_RS17870 (MKY51_17870) - 3544599..3546095 (+) 1497 WP_339174555.1 sugar ABC transporter ATP-binding protein -
  MKY51_RS17875 (MKY51_17875) rbsC 3546082..3547023 (+) 942 WP_339174556.1 ribose ABC transporter permease -
  MKY51_RS17880 (MKY51_17880) rbsB 3547039..3547977 (+) 939 WP_339174558.1 ribose ABC transporter substrate-binding protein RbsB -
  MKY51_RS17885 (MKY51_17885) rpsR 3548131..3548370 (-) 240 WP_191701183.1 30S ribosomal protein S18 -
  MKY51_RS17890 (MKY51_17890) ssbA 3548412..3548969 (-) 558 WP_339174560.1 single-stranded DNA-binding protein Machinery gene
  MKY51_RS17895 (MKY51_17895) rpsF 3549007..3549297 (-) 291 WP_008408357.1 30S ribosomal protein S6 -
  MKY51_RS17900 (MKY51_17900) - 3549693..3552503 (+) 2811 WP_339174562.1 carbohydrate binding domain-containing protein -
  MKY51_RS17905 (MKY51_17905) ychF 3552561..3553661 (-) 1101 WP_339174564.1 redox-regulated ATPase YchF -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20319.19 Da        Isoelectric Point: 4.7719

>NTDB_id=967111 MKY51_RS17890 WP_339174560.1 3548412..3548969(-) (ssbA) [Solibacillus sp. FSL R5-0691]
MINRVVLVGRLTKDPELRYTPSGVPMARFTIAVNRTFSSQSGEREADFIGCIAWRKQAENLANFMRKGSLIGVEGRIQTG
SFEGQDGKRVYTTDVVADSVQFLEPRGGANASQGAQSQQYSGGQNYGGQPSYNQPNQQFGGAQSQDSYGSYQQPSQNQQN
YTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=967111 MKY51_RS17890 WP_339174560.1 3548412..3548969(-) (ssbA) [Solibacillus sp. FSL R5-0691]
ATGATTAACCGTGTCGTATTAGTCGGAAGACTTACAAAGGATCCAGAGCTTCGTTACACACCGAGTGGAGTTCCAATGGC
ACGTTTTACGATTGCCGTAAACCGTACATTTTCGAGCCAGTCTGGTGAACGTGAAGCAGATTTCATAGGCTGTATCGCCT
GGAGAAAACAAGCTGAAAACTTAGCGAACTTCATGAGAAAAGGGAGTTTGATTGGTGTAGAAGGTCGTATTCAAACAGGT
AGCTTTGAAGGACAAGATGGAAAGCGTGTGTATACAACAGATGTCGTTGCTGATTCAGTGCAGTTCTTAGAACCACGTGG
AGGAGCTAATGCATCACAAGGTGCACAAAGCCAACAATACAGTGGTGGGCAAAATTATGGTGGTCAGCCATCTTATAATC
AGCCTAACCAACAATTTGGAGGCGCGCAATCCCAGGATTCATACGGTTCTTATCAACAGCCATCTCAAAATCAGCAAAAC
TATACACGTGTAGATGAAGATCCATTTGCAAACAGCAAAGGACCGATTGAAGTGTCTGAAGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.595

100

0.546
  ssb Latilactobacillus sakei subsp. sakei 23K

48.925

100

0.492

Multiple sequence alignment