Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NST03_RS19070 Genome accession   NZ_CP150226
Coordinates   4476196..4476705 (+) Length   169 a.a.
NCBI ID   WP_039295814.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R5-0912     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4471196..4481705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST03_RS19030 (NST03_19030) - 4472159..4472659 (+) 501 WP_042241229.1 DUF4446 family protein -
  NST03_RS19035 (NST03_19035) yyaC 4472631..4473239 (-) 609 WP_042241227.1 spore protease YyaC -
  NST03_RS19040 (NST03_19040) - 4473345..4473614 (+) 270 WP_042241225.1 DUF3343 domain-containing protein -
  NST03_RS19045 (NST03_19045) - 4473611..4474651 (+) 1041 WP_042241223.1 mechanosensitive ion channel family protein -
  NST03_RS19050 (NST03_19050) - 4474651..4474863 (+) 213 WP_042241221.1 DUF951 domain-containing protein -
  NST03_RS19060 (NST03_19060) - 4475378..4475575 (-) 198 WP_039295806.1 YjzC family protein -
  NST03_RS19065 (NST03_19065) rpsF 4475863..4476147 (+) 285 WP_038598251.1 30S ribosomal protein S6 -
  NST03_RS19070 (NST03_19070) ssbA 4476196..4476705 (+) 510 WP_039295814.1 single-stranded DNA-binding protein Machinery gene
  NST03_RS19075 (NST03_19075) rpsR 4476727..4476999 (+) 273 WP_036699837.1 30S ribosomal protein S18 -
  NST03_RS19080 (NST03_19080) - 4477260..4477493 (+) 234 WP_052416810.1 hypothetical protein -
  NST03_RS19085 (NST03_19085) - 4477951..4479924 (+) 1974 WP_042241218.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18492.27 Da        Isoelectric Point: 4.8280

>NTDB_id=966955 NST03_RS19070 WP_039295814.1 4476196..4476705(+) (ssbA) [Paenibacillus sp. FSL R5-0912]
MLNRIILIGRLTRDPELRYTPAGVAVTQFTLAVDRNFTGQNGEREADFIPVVTWRQLAETCANYLRKGRLAAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESSQNREGGNAPSGGSTPEEPAFGGGGNGGNSARGNNNNFSRNNNTQDPFSGDGKPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=966955 NST03_RS19070 WP_039295814.1 4476196..4476705(+) (ssbA) [Paenibacillus sp. FSL R5-0912]
TTGTTGAACCGTATCATTCTGATCGGTCGGTTGACCCGTGATCCGGAACTTCGTTATACTCCCGCTGGTGTTGCCGTAAC
GCAGTTTACGCTTGCCGTAGACCGCAACTTTACGGGCCAGAACGGTGAACGCGAAGCGGACTTTATCCCGGTAGTAACCT
GGAGACAGCTGGCTGAGACCTGTGCCAATTACTTGCGCAAAGGACGACTGGCTGCCGTAGAAGGACGCATCCAAGTACGG
AATTACGAGAATAATGAAGGTAAACGTGTATACGTCACTGAAGTTATTGCTGATAATGTCCGATTCCTGGAATCCTCGCA
GAACCGTGAAGGCGGAAATGCACCAAGTGGTGGAAGTACTCCCGAAGAGCCTGCCTTTGGTGGCGGCGGTAACGGCGGTA
ACAGTGCACGCGGAAATAACAATAATTTCTCGCGTAACAACAATACTCAAGATCCTTTTTCGGGCGATGGAAAACCGATC
GATATATCGGACGATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.802

100

0.574
  ssb Latilactobacillus sakei subsp. sakei 23K

50

100

0.509

Multiple sequence alignment