Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACJPHY_RS07175 Genome accession   NZ_CP176424
Coordinates   1534389..1535024 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain IGLPR01     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1529389..1540024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJPHY_RS07160 - 1530098..1531342 (+) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -
  ACJPHY_RS07165 - 1531427..1531960 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  ACJPHY_RS07170 comA 1532091..1534316 (+) 2226 WP_074222050.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACJPHY_RS07175 exbB 1534389..1535024 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACJPHY_RS07180 - 1535021..1535461 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  ACJPHY_RS07185 lpxK 1535461..1536459 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  ACJPHY_RS07190 - 1536497..1536682 (+) 186 WP_003091157.1 Trm112 family protein -
  ACJPHY_RS07195 kdsB 1536682..1537446 (+) 765 WP_003130694.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACJPHY_RS07200 - 1537446..1537910 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  ACJPHY_RS07205 murB 1537907..1538926 (+) 1020 WP_003091153.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=966915 ACJPHY_RS07175 WP_003091163.1 1534389..1535024(+) (exbB) [Pseudomonas aeruginosa strain IGLPR01]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=966915 ACJPHY_RS07175 WP_003091163.1 1534389..1535024(+) (exbB) [Pseudomonas aeruginosa strain IGLPR01]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTTGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81