Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   MKZ16_RS06250 Genome accession   NZ_CP150225
Coordinates   1424746..1425693 (+) Length   315 a.a.
NCBI ID   WP_076104809.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R5-0928     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1419746..1430693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKZ16_RS06220 (MKZ16_06220) - 1420061..1421026 (+) 966 WP_076104854.1 nitronate monooxygenase family protein -
  MKZ16_RS06225 (MKZ16_06225) - 1421112..1422206 (-) 1095 WP_036681827.1 Xaa-Pro peptidase family protein -
  MKZ16_RS06230 (MKZ16_06230) - 1422432..1423274 (+) 843 WP_076104813.1 SDR family oxidoreductase -
  MKZ16_RS06235 (MKZ16_06235) - 1423300..1423803 (+) 504 WP_076104812.1 GNAT family N-acetyltransferase -
  MKZ16_RS06240 (MKZ16_06240) - 1423821..1424165 (-) 345 WP_076104811.1 helix-turn-helix domain-containing protein -
  MKZ16_RS06245 (MKZ16_06245) - 1424257..1424517 (+) 261 WP_076104810.1 YqkE family protein -
  MKZ16_RS06250 (MKZ16_06250) ceuB 1424746..1425693 (+) 948 WP_076104809.1 ABC transporter permease Machinery gene
  MKZ16_RS06255 (MKZ16_06255) - 1425696..1426640 (+) 945 WP_036681842.1 iron chelate uptake ABC transporter family permease subunit -
  MKZ16_RS06260 (MKZ16_06260) - 1426634..1427389 (+) 756 WP_036681845.1 ABC transporter ATP-binding protein -
  MKZ16_RS06265 (MKZ16_06265) - 1427511..1428515 (+) 1005 WP_303396593.1 siderophore ABC transporter substrate-binding protein -
  MKZ16_RS06270 (MKZ16_06270) - 1428682..1429185 (+) 504 WP_038569189.1 sigma-70 family RNA polymerase sigma factor -
  MKZ16_RS06275 (MKZ16_06275) - 1429178..1430371 (+) 1194 WP_076104808.1 anti-sigma factor -

Sequence


Protein


Download         Length: 315 a.a.        Molecular weight: 34505.71 Da        Isoelectric Point: 10.1461

>NTDB_id=966914 MKZ16_RS06250 WP_076104809.1 1424746..1425693(+) (ceuB) [Paenibacillus sp. FSL R5-0928]
MKLKYLSLLLIVFSFISLFIGVKNISPLDLFHLTESQAQTLLVSRIPRLAALIIAGVSMSIAGLIMQQLSRNKFVSPTTA
GTMDSAKFGILVSLMLFTGATPMQKLLVAFVFALLGTFIFMRILDRIKFKDSIFIPLVGLMFGNIVGSITTFFAYKNDLI
QNISSWMLGDFSTIIKGQYELIYISIPLVILAYLFANKFTVAGMGEDFSVNLGMNYKAVVNVGLVIVALISSVVILTVGT
IPFLGLVVPNIVTLYIGDNLKKSLAHTAILGAVFLLFCDILGRLIIYPYEISISLTVGVIGSGLFIYLLMRRKAN

Nucleotide


Download         Length: 948 bp        

>NTDB_id=966914 MKZ16_RS06250 WP_076104809.1 1424746..1425693(+) (ceuB) [Paenibacillus sp. FSL R5-0928]
ATGAAACTAAAATATTTGTCCCTACTTCTAATAGTATTTTCATTTATATCTTTGTTTATAGGCGTTAAAAATATATCCCC
ATTAGATCTCTTTCATCTTACAGAATCTCAAGCACAGACCTTGCTGGTAAGCCGGATTCCCCGGTTAGCCGCATTGATTA
TCGCTGGAGTCAGCATGAGTATTGCCGGATTAATTATGCAACAGCTGTCACGCAATAAATTCGTCTCACCGACTACGGCA
GGGACGATGGATTCCGCAAAATTTGGTATTCTCGTATCCCTCATGTTATTCACAGGCGCAACGCCAATGCAGAAATTGCT
TGTTGCTTTTGTTTTTGCGCTATTGGGCACCTTTATTTTTATGAGAATCCTGGATCGGATCAAGTTCAAGGATAGTATTT
TTATCCCGCTGGTCGGACTCATGTTCGGCAACATTGTAGGCTCGATTACAACATTTTTTGCGTATAAAAATGATTTGATT
CAGAATATCTCATCTTGGATGCTTGGGGATTTCTCGACGATTATCAAAGGCCAATACGAATTAATTTATATCAGCATTCC
ACTTGTCATTCTGGCGTACCTCTTCGCTAATAAATTTACGGTAGCCGGTATGGGCGAGGATTTCTCCGTTAATCTTGGCA
TGAACTACAAAGCGGTGGTCAACGTGGGATTGGTAATTGTAGCGTTAATCTCTTCTGTTGTCATTTTAACCGTAGGTACG
ATTCCATTTCTGGGTCTAGTAGTACCTAACATTGTAACGTTGTACATAGGGGATAACCTCAAAAAAAGTCTGGCGCATAC
AGCCATTCTCGGAGCGGTGTTCCTCCTGTTCTGCGATATTCTGGGCAGGCTCATTATCTATCCATATGAAATATCAATCA
GTCTCACGGTAGGCGTCATCGGTAGTGGTCTGTTTATCTACTTGCTGATGAGAAGAAAGGCGAACTAG

Domains


Predicted by InterproScan.

(9-311)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

56.051

99.683

0.559


Multiple sequence alignment