Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ACKWPP_RS08325 Genome accession   NZ_CP176418
Coordinates   1637019..1637615 (-) Length   198 a.a.
NCBI ID   WP_002935848.1    Uniprot ID   A0ABV2ES67
Organism   Streptococcus suis strain KKAHC02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1632019..1642615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWPP_RS08305 (ACKWPP_08305) - 1633644..1634312 (-) 669 WP_024407021.1 ABC transporter ATP-binding protein -
  ACKWPP_RS08310 (ACKWPP_08310) - 1634322..1635398 (-) 1077 WP_409373794.1 ABC transporter permease -
  ACKWPP_RS08315 (ACKWPP_08315) - 1635400..1635780 (-) 381 WP_409373795.1 OsmC family protein -
  ACKWPP_RS08320 (ACKWPP_08320) - 1635868..1636914 (-) 1047 WP_409373796.1 D-alanine--D-alanine ligase -
  ACKWPP_RS08325 (ACKWPP_08325) recR 1637019..1637615 (-) 597 WP_002935848.1 recombination mediator RecR Machinery gene
  ACKWPP_RS08330 (ACKWPP_08330) pbp2b 1637624..1639699 (-) 2076 WP_024384903.1 penicillin-binding protein PBP2B -
  ACKWPP_RS08335 (ACKWPP_08335) vga(F) 1639791..1641176 (-) 1386 WP_409373797.1 ABC-F type ribosomal protection protein Vga(F) -
  ACKWPP_RS08340 (ACKWPP_08340) vicX 1641431..1642234 (-) 804 WP_002935843.1 MBL fold metallo-hydrolase Regulator

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21693.80 Da        Isoelectric Point: 4.4757

>NTDB_id=966865 ACKWPP_RS08325 WP_002935848.1 1637019..1637615(-) (recR) [Streptococcus suis strain KKAHC02]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLSYCSICGNLTDQDPCAICQDSTRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMDNEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=966865 ACKWPP_RS08325 WP_002935848.1 1637019..1637615(-) (recR) [Streptococcus suis strain KKAHC02]
ATGCTTTACCCTACACCTATTGCCAAGTTAATTGATAGCTATTCTAAATTGCCAGGTATCGGTATAAAAACGGCTACCCG
TTTAGCTTTTTATACTATTGGCATGGAGGATGATGTCGTTAATGAGTTTGCAAAAAATTTATTGGCAGCCAAGCGAGACC
TATCTTATTGCTCTATTTGTGGTAATTTGACAGATCAGGACCCCTGTGCCATTTGCCAGGACTCAACGCGAGACCAATCT
ACTATTTTGATTGTAGAGGATAGTCGAGATGTTACAGCCTTGGAAAATATTCAAGAATACCACGGTCTTTATCATGTCTT
GCATGGCTTGATTTCTCCCATGAATGGTATCGGACCAGATGATATTAATTTGAAAACCCTCCTCACTCGCCTGATGGACA
ATGAGGTTACAGAAGTTATTGTGGCGACCAATGCAACAGCAGATGGAGAGGCTACATCTATGTATATCTCACGTGTCCTC
AAACCTGCGGGAATCAAAGTGACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAATCGTACAGAGCTATAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.879

100

0.879
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49

Multiple sequence alignment