Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACKWPP_RS06735 Genome accession   NZ_CP176418
Coordinates   1299157..1300926 (-) Length   589 a.a.
NCBI ID   WP_044680003.1    Uniprot ID   -
Organism   Streptococcus suis strain KKAHC02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1294157..1305926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWPP_RS06705 (ACKWPP_06705) - 1295104..1295583 (-) 480 WP_409374377.1 transposase -
  ACKWPP_RS06710 (ACKWPP_06710) - 1295621..1295950 (-) 330 WP_409373684.1 IS630 transposase-related protein -
  ACKWPP_RS06715 (ACKWPP_06715) - 1296188..1296352 (-) 165 WP_024384426.1 hypothetical protein -
  ACKWPP_RS06720 (ACKWPP_06720) obgE 1296810..1298123 (-) 1314 WP_409373685.1 GTPase ObgE -
  ACKWPP_RS06725 (ACKWPP_06725) - 1298327..1298455 (-) 129 WP_002943675.1 DUF4044 domain-containing protein -
  ACKWPP_RS06730 (ACKWPP_06730) - 1298627..1299064 (-) 438 WP_153596812.1 hypothetical protein -
  ACKWPP_RS06735 (ACKWPP_06735) uvrC 1299157..1300926 (-) 1770 WP_044680003.1 excinuclease ABC subunit UvrC Machinery gene
  ACKWPP_RS06740 (ACKWPP_06740) - 1301434..1302177 (+) 744 WP_024388854.1 ABC transporter ATP-binding protein -
  ACKWPP_RS06745 (ACKWPP_06745) - 1302174..1303784 (+) 1611 WP_044673688.1 hypothetical protein -
  ACKWPP_RS06750 (ACKWPP_06750) - 1303807..1304250 (-) 444 WP_002935466.1 VOC family protein -
  ACKWPP_RS06755 (ACKWPP_06755) ldcB 1304339..1305094 (-) 756 WP_079394247.1 LD-carboxypeptidase LdcB/DacB -
  ACKWPP_RS06760 (ACKWPP_06760) - 1305443..1305694 (-) 252 WP_024384420.1 phage holin -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 67748.96 Da        Isoelectric Point: 9.2416

>NTDB_id=966855 ACKWPP_RS06735 WP_044680003.1 1299157..1300926(-) (uvrC) [Streptococcus suis strain KKAHC02]
MNDLIKYKLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDTKTEALVSEIADFEFIVTDSNIEALLLEIN
LIQENKPRYNIMLKDDKSYPFIKITKERHPRLMITRQIKKDGGQYFGPYPDVGAANQTLKLLERLYPFRKCKLPENKYCL
YYHLGQCLAHGENLPSLSDYDKMAKEVAQFLTGHDDKIVKEVQEKMKAAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAH
DLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNLFPYYNDADEDFLTYIGQFYRDQQHLIPSEVLIPQDIDQEAVEAL
VDTKVIKPQRGEKKQLINLATKNARVSLEQKFNLLEKNLEKTYGAVENIGQLLGIPTPVRIEAFDNSNIMGTSPVSAMVV
FENGVPNKKEYRKYKIKTVEGPDDYASMREVLQRRYSRVLRDGLTPPDLIIIDGGQGQVNVAKQVIEQELGMSIPIAGLQ
KNDKHQTHELLFGNPLEVVELPRNSQEFFLLHRIQDEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQALMKHFKSI
GNIQSASLQEIAEAGVPYKVAEKVKEKLK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=966855 ACKWPP_RS06735 WP_044680003.1 1299157..1300926(-) (uvrC) [Streptococcus suis strain KKAHC02]
ATGAACGATTTGATCAAGTATAAGTTGGAGTTGCTGCCGGACAGTCCGGGTTGCTACCTCCATAAAAACAAGTATGGAAA
GATTATCTATGTGGGCAAGGCTAAAAACCTGCGCAATCGGGTGCGGTCTTATTTTCGTGGTGCCCATGATACCAAGACAG
AGGCCTTAGTATCTGAAATTGCCGACTTTGAATTTATCGTGACGGATTCCAATATCGAGGCCCTCTTGTTGGAAATCAAT
TTGATTCAGGAAAACAAGCCTCGCTATAACATTATGCTCAAGGATGACAAGTCCTATCCCTTTATCAAGATTACCAAGGA
ACGTCACCCACGGCTGATGATTACACGGCAGATAAAAAAGGATGGTGGTCAGTATTTTGGTCCCTATCCAGATGTGGGTG
CGGCTAACCAGACCCTCAAGCTATTGGAGCGTCTGTATCCTTTCCGCAAGTGTAAATTGCCTGAGAACAAGTATTGTCTT
TATTATCATTTGGGGCAATGTTTGGCCCATGGAGAAAACCTGCCCAGCCTGTCTGACTATGACAAGATGGCTAAGGAAGT
GGCCCAGTTCTTGACAGGGCATGATGATAAGATTGTCAAGGAAGTCCAGGAAAAGATGAAAGCGGCTGCTGGCAATTTGG
AATTTGAAAAGGCTGCGGAATATCGAGATGTCCTGCAATCCATTTCCACCCTGCGGACCAAGCAACGTGTGATGGCTCAT
GACTTGCAAAATCGGGATGTCTTTGGCTACTATGTGGACAAGGGCTGGATGTGTGTGCAGGTTTTCTTTGTTCGGCAGGG
GAAACTGATTGAGCGGAATGTCAATCTTTTTCCATACTATAATGATGCGGACGAAGATTTTTTGACCTACATCGGTCAGT
TTTACAGGGACCAGCAACATTTGATTCCCTCAGAGGTCTTGATACCGCAGGATATTGACCAAGAAGCCGTAGAAGCTCTG
GTAGATACCAAGGTCATCAAGCCCCAGCGTGGCGAGAAGAAGCAGCTCATCAATCTGGCGACCAAGAATGCGCGTGTTAG
TCTGGAACAGAAGTTTAATCTTTTGGAGAAAAATCTGGAGAAGACCTACGGTGCTGTGGAGAATATCGGGCAGCTTTTGG
GGATTCCGACGCCTGTGCGGATTGAGGCTTTCGATAACTCCAACATCATGGGGACCAGTCCTGTGTCGGCTATGGTGGTC
TTTGAAAATGGGGTGCCTAATAAAAAGGAATACCGCAAGTATAAGATTAAGACGGTGGAGGGGCCAGACGATTATGCTTC
TATGCGGGAAGTTTTGCAGCGGCGGTACAGTCGGGTGCTGCGGGACGGTTTGACACCGCCTGATTTGATTATCATTGACG
GTGGTCAGGGGCAGGTCAATGTCGCCAAGCAGGTGATTGAGCAGGAGTTGGGTATGTCCATTCCCATTGCAGGTTTGCAG
AAGAATGACAAGCACCAGACCCACGAGTTGCTCTTTGGCAATCCGCTGGAAGTGGTGGAGTTGCCTCGTAATTCTCAGGA
ATTTTTCCTCCTGCATCGGATTCAAGATGAAGTTCACCGCTTTGCTATTGAGTTTCACCGGCAGGTTCGGTCAAAAAATT
CCTTCTCATCCAAATTGGACGGCATAGAGGGCTTGGGACCAAAACGCAAACAGGCTCTAATGAAGCATTTCAAGTCTATT
GGCAATATCCAGTCAGCAAGTTTGCAGGAAATCGCAGAAGCAGGTGTGCCGTATAAGGTGGCGGAGAAGGTTAAGGAGAA
GTTGAAGTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(538-589)

GIY-YIG catalytic domain (GIY-YIG)

(17-90)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(372-523)

UvrB/uvrC motif (UVR)

(196-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

77.721

99.83

0.776
  uvrC Streptococcus pneumoniae R6

77.381

99.83

0.772
  uvrC Streptococcus pneumoniae D39

77.381

99.83

0.772