Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   ACKWPP_RS06690 Genome accession   NZ_CP176418
Coordinates   1280471..1284121 (-) Length   1216 a.a.
NCBI ID   WP_409373682.1    Uniprot ID   -
Organism   Streptococcus suis strain KKAHC02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1275471..1289121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWPP_RS06670 (ACKWPP_06670) - 1276306..1277481 (+) 1176 WP_024393431.1 Rep family protein -
  ACKWPP_RS06675 (ACKWPP_06675) - 1277468..1277656 (+) 189 WP_024393432.1 helix-turn-helix domain-containing protein -
  ACKWPP_RS06680 (ACKWPP_06680) - 1277757..1278803 (+) 1047 WP_015647375.1 site-specific integrase -
  ACKWPP_RS06685 (ACKWPP_06685) - 1278792..1280230 (-) 1439 Protein_1272 IS1182 family transposase -
  ACKWPP_RS06690 (ACKWPP_06690) rexA 1280471..1284121 (-) 3651 WP_409373682.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  ACKWPP_RS06695 (ACKWPP_06695) rexB 1284121..1287387 (-) 3267 WP_409373683.1 ATP-dependent nuclease subunit B Machinery gene

Sequence

Protein


Download         Length: 1216 a.a.        Molecular weight: 139597.86 Da        Isoelectric Point: 4.9844

>NTDB_id=966853 ACKWPP_RS06690 WP_409373682.1 1280471..1284121(-) (rexA) [Streptococcus suis strain KKAHC02]
MAFEEFLSAEEIKAVQLAEAHSDKQQKRTPEQIEAIYTHGQNVLVSASAGSGKTFVMVQRILDKLKRGVGIDQLFISTFT
VKAAGELKERIEKNLNETIAETTDMDLRRHLSAQLADLTKADIGTMDSFTQKLVTTYGYSLGISPQFRILQDETEKASLK
KEVFDQLFADYLEQDENGAFRKLVGNFSGNRKDNGGFRQVVYQVHDFSQSTSSPTKWLKEQAVQADLYSQERIEQILEQG
FKEKVLDKLYQAADFFRYHVEWGRNDFGSAKYFANVEEVLDLLTGLDSLDQKDLMERVERILLINDQSRGKGLTNANRPK
DEHLIAFKEEYNAGKSQIISGLRDLGQEVYELTLLKDYQVQALPLLILLRDFVLDFSQAYLDVKIKEVAFEFGDIGHFAI
RILEENADIRQFFQEKYHEVMVDEYQDNNHSQERMLDLLSNGHNRFMVGDIKQSIYRFRQADPMIFQEKFELYQANPQAG
KLILLKENFRSQIEVLEATNAIFTRLMDRQVGEIKYDDTHSLVAGSPGQKIAQPKHEMEYLIYDQQESAHSSTDAEEETP
LTAGEIEVVAKEIIRLHNEEGADFKDITLLVQKRTHNDLIMSIFEKHGIPIVADGGAASYLQSLEVMIMLDTLRVINNPL
NDYALVALLKSPMFRFDEDELTRISLQAGTGFFYQKMEIAHQTNGQHPELMSGELKKKIKDFLSILENWRAFAKLHSIYD
LIWKIFNEKFYYDYVGALPNGSKRQANLYALGLRANQFEKTGYKGLSRFIAMIDRALANDKDLADVQEFLPQNAVQLMTI
HKSKGLEFKYVFLMNIDKRFNLEDHYQSVIISRKNGLGIQYLADMKDKVNSPLPQVRVLMNTLPYQTNLQELKIANLSEQ
MRLLYVALTRAEKKLYLIGKGNADKLAEKYDGKKEDGVLAQSTRESMATFQDWILAIDEAFSGEDLRFKKVFVTDEDLTE
EKIGKLTLKSKLEDASLKDIRQSEDIAQALDQLSSVQELNEDYKAAIELPSLRTPSQIKKLYEPILEQEGMEVMEKYQPK
RTFNLPDFSKKPKITGAQVGSAVHELMQRLDLSWLVTEDTVREALETVHAEQAVKDKINVQMILDFFDTDLGREILANTD
KLHREAPFASLQTDPVSQENFVLRGIIDGYLLYDDHIVLFDYKTDKYDQPIQLSQRYQAQMQLYAEALKKAYKIDRVDCH
LILLGGERIEVVEVNI

Nucleotide


Download         Length: 3651 bp        

>NTDB_id=966853 ACKWPP_RS06690 WP_409373682.1 1280471..1284121(-) (rexA) [Streptococcus suis strain KKAHC02]
ATGGCTTTTGAAGAATTTTTAAGCGCGGAAGAAATCAAGGCTGTGCAGCTGGCGGAAGCCCATTCTGATAAGCAACAAAA
ACGCACACCTGAGCAGATTGAAGCCATCTACACACACGGTCAGAATGTTCTGGTCTCTGCATCGGCTGGGTCAGGAAAGA
CTTTCGTCATGGTTCAACGGATTTTGGATAAGTTGAAGCGTGGCGTCGGGATTGACCAGCTCTTTATCTCGACCTTTACA
GTCAAGGCGGCTGGTGAGTTGAAGGAGCGGATTGAGAAAAATCTCAATGAAACCATTGCGGAGACGACGGATATGGACTT
GCGTCGGCATTTGTCAGCTCAGTTGGCGGATTTGACCAAGGCTGATATTGGGACCATGGACTCCTTTACGCAGAAATTGG
TGACAACCTACGGTTATAGCCTTGGCATTTCTCCACAGTTTCGGATTTTACAGGATGAGACAGAAAAAGCGAGTCTGAAA
AAAGAAGTCTTTGACCAGCTCTTTGCAGATTATCTTGAACAGGATGAAAATGGTGCATTCCGCAAACTGGTTGGCAATTT
TTCGGGCAACCGGAAGGATAATGGCGGTTTCCGTCAGGTTGTTTATCAGGTGCATGATTTTAGCCAATCGACCAGCAGTC
CAACTAAATGGCTGAAAGAGCAGGCTGTTCAAGCTGATTTGTACAGTCAAGAGCGTATAGAGCAAATCTTAGAGCAAGGC
TTTAAGGAAAAAGTATTAGACAAGCTCTATCAAGCTGCAGATTTCTTCCGCTACCATGTGGAATGGGGCAGAAATGACTT
TGGATCTGCCAAGTATTTTGCAAATGTGGAAGAAGTCTTGGATTTGCTGACAGGTTTAGATAGCCTGGACCAGAAGGACT
TGATGGAGCGGGTTGAAAGAATCCTTCTCATCAATGACCAGTCCAGAGGAAAAGGCTTGACCAATGCCAATCGACCAAAA
GATGAACATTTGATAGCCTTTAAAGAAGAATACAATGCTGGCAAGAGCCAGATTATCTCAGGACTTAGAGATTTGGGTCA
GGAAGTTTATGAATTAACCCTGCTGAAAGACTATCAGGTTCAAGCTTTGCCCTTGCTGATATTATTACGTGACTTTGTCT
TGGATTTTTCGCAGGCTTATCTGGATGTCAAAATCAAGGAAGTAGCTTTTGAATTTGGCGATATTGGGCATTTTGCCATT
CGTATTTTAGAAGAAAATGCGGACATCCGCCAGTTTTTCCAAGAAAAATACCACGAAGTCATGGTGGACGAGTACCAGGA
TAACAACCATAGCCAAGAGCGAATGCTGGACCTGCTGTCTAACGGTCACAACCGCTTTATGGTGGGCGACATTAAGCAGT
CCATCTATCGATTCCGTCAGGCGGATCCAATGATTTTCCAAGAGAAATTTGAACTGTATCAGGCCAATCCTCAGGCTGGG
AAATTGATTTTGCTCAAGGAAAATTTCCGTAGTCAGATTGAGGTCTTGGAGGCAACAAATGCTATTTTCACGCGCCTGAT
GGACCGTCAAGTAGGGGAAATCAAGTATGACGACACCCACAGTCTAGTGGCTGGTAGTCCTGGTCAAAAAATTGCCCAGC
CCAAGCATGAGATGGAATATTTGATTTACGACCAGCAGGAGAGCGCACATTCTTCAACGGATGCTGAGGAAGAAACACCT
CTGACTGCTGGTGAAATTGAGGTCGTTGCAAAAGAGATTATTCGTCTTCACAATGAAGAAGGAGCAGACTTCAAGGACAT
CACTCTCTTGGTACAAAAGCGGACGCACAATGATCTCATTATGTCCATTTTTGAAAAACATGGCATTCCAATTGTGGCAG
ATGGCGGAGCAGCCTCCTATCTGCAATCTTTAGAAGTCATGATTATGCTGGATACCTTGCGGGTTATCAATAATCCACTC
AATGACTATGCCTTGGTTGCTCTTCTCAAATCGCCTATGTTCCGATTCGATGAGGATGAACTGACAAGGATTTCCTTGCA
GGCTGGGACAGGTTTCTTTTACCAGAAAATGGAAATAGCCCATCAAACAAATGGGCAACATCCTGAACTTATGTCAGGAG
AGTTGAAGAAGAAAATCAAGGATTTCTTGTCTATCTTAGAAAACTGGCGTGCTTTTGCCAAACTGCATTCTATTTATGAC
CTGATTTGGAAGATTTTCAATGAAAAATTCTACTATGACTATGTTGGTGCTCTTCCAAATGGCAGCAAGCGGCAGGCCAA
TTTATACGCACTAGGTCTGCGTGCCAACCAGTTCGAAAAAACAGGCTACAAGGGCTTGTCCCGCTTCATCGCCATGATTG
ACCGTGCCTTAGCAAATGATAAGGATTTGGCAGATGTACAAGAGTTTCTACCGCAAAATGCTGTTCAGCTGATGACCATT
CATAAGTCAAAAGGTCTGGAGTTCAAATATGTCTTCCTCATGAACATCGATAAGCGATTCAACTTGGAAGACCATTACCA
GTCAGTCATTATCAGCCGGAAAAATGGTCTAGGTATCCAATATTTAGCGGATATGAAAGATAAGGTAAATAGCCCATTGC
CTCAGGTGCGAGTCTTAATGAACACCCTTCCTTATCAAACTAATCTCCAAGAGCTAAAAATTGCCAATCTTTCAGAACAA
ATGCGGTTGCTTTATGTCGCACTAACGCGTGCAGAGAAGAAGCTGTATCTGATTGGAAAGGGCAATGCTGACAAGTTAGC
TGAAAAATACGATGGCAAAAAGGAAGATGGCGTACTTGCCCAATCAACTCGTGAAAGCATGGCGACCTTCCAAGACTGGA
TTCTAGCCATTGATGAGGCTTTTTCAGGAGAAGACTTGCGCTTCAAGAAAGTCTTTGTGACGGATGAGGATTTGACAGAG
GAGAAGATTGGTAAACTTACATTGAAGAGTAAGCTAGAAGACGCCAGCCTTAAAGATATTCGTCAATCAGAAGACATCGC
CCAGGCCTTGGACCAATTATCTTCTGTCCAAGAGTTGAACGAAGACTATAAGGCTGCTATTGAATTGCCAAGTTTACGGA
CTCCAAGTCAAATCAAGAAACTCTATGAGCCTATTTTGGAACAAGAAGGCATGGAAGTTATGGAAAAATACCAGCCCAAA
CGGACCTTCAACTTGCCAGATTTTTCCAAGAAACCAAAAATCACTGGAGCCCAAGTCGGTTCGGCAGTCCATGAACTTAT
GCAACGTTTGGATCTGTCTTGGTTGGTGACAGAAGATACGGTAAGAGAAGCTCTAGAAACTGTTCATGCTGAGCAAGCGG
TTAAAGATAAAATCAATGTTCAGATGATTTTGGATTTCTTCGATACAGACTTAGGAAGAGAAATTCTAGCCAATACGGAC
AAACTCCACCGAGAAGCTCCATTTGCAAGTTTGCAGACAGATCCTGTATCTCAGGAAAACTTTGTCCTTCGTGGGATTAT
CGATGGCTACCTACTATATGATGATCATATTGTCCTCTTTGATTACAAGACAGACAAATATGATCAACCAATCCAACTCA
GCCAACGTTACCAAGCTCAAATGCAACTCTATGCGGAGGCATTGAAAAAAGCCTACAAGATAGATCGTGTAGACTGCCAT
TTGATTTTGCTTGGTGGGGAGAGGATTGAAGTGGTCGAAGTCAACATATAG

Domains

Predicted by InterProScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-471)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1037-1192)

UvrD-like helicase C-terminal domain (UvrD_C)

(483-898)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

51.84

100

0.521