Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NHP_RS07960 Genome accession   NZ_AP026684
Coordinates   1502248..1502805 (+) Length   185 a.a.
NCBI ID   WP_015107304.1    Uniprot ID   A0A0K2YBR9
Organism   Helicobacter heilmannii strain     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1497248..1507805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHP_RS07935 (ASB1_16750) - 1498517..1499518 (-) 1002 WP_015107307.1 agmatine deiminase family protein -
  NHP_RS07940 (ASB1_16760) - 1499569..1499817 (+) 249 WP_265341580.1 hypothetical protein -
  NHP_RS07945 (ASB1_16770) tsaD 1499820..1500585 (+) 766 Protein_1566 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  NHP_RS08780 (ASB1_16790) - 1500652..1502247 (+) 1596 WP_053825816.1 methyl-accepting chemotaxis protein -
  NHP_RS07960 (ASB1_16800) comFC 1502248..1502805 (+) 558 WP_015107304.1 phosphoribosyltransferase family protein Machinery gene
  NHP_RS07965 (ASB1_16810) - 1502818..1503735 (-) 918 WP_015107303.1 response regulator -
  NHP_RS07970 (ASB1_16820) ispF 1503728..1504909 (-) 1182 WP_015107302.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  NHP_RS07975 (ASB1_16830) thiC 1505085..1506419 (+) 1335 WP_015107301.1 phosphomethylpyrimidine synthase ThiC -
  NHP_RS07980 (ASB1_16840) - 1506416..1506784 (-) 369 WP_238374891.1 cytochrome c -
  NHP_RS07985 (ASB1_16850) - 1506845..1507693 (+) 849 WP_053825778.1 tetrahydrofolate dehydrogenase/cyclohydrolase catalytic domain-containing protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20725.49 Da        Isoelectric Point: 10.0151

>NTDB_id=96675 NHP_RS07960 WP_015107304.1 1502248..1502805(+) (comFC) [Helicobacter heilmannii strain]
MRCFSCGVWSFKPLCKRCYTELVPRLQTHRLEHIPVLSFYAYDDIELLLKSKYSLVGSRLLPLLASRVQSLLKPLLQESL
YALPIDDHIKRGYSHTAAIARALCANSPCKPVYNKLRAIKNITYAGQSLEFRKQNPKGFVFKGDSRLAYFLVDDVLTTGT
TLCQAIQTLKAAGVKVAFALVLAKA

Nucleotide


Download         Length: 558 bp        

>NTDB_id=96675 NHP_RS07960 WP_015107304.1 1502248..1502805(+) (comFC) [Helicobacter heilmannii strain]
ATGCGCTGTTTTAGCTGCGGGGTGTGGAGTTTTAAACCCCTTTGCAAGCGCTGCTACACTGAGCTAGTCCCGCGTCTACA
GACCCACAGACTAGAGCACATCCCCGTTTTGAGCTTTTATGCCTATGATGACATTGAGCTGCTGTTAAAGAGCAAATACA
GCCTTGTAGGCAGCCGCCTTTTGCCCCTTTTGGCCTCAAGGGTGCAGAGCCTGTTAAAGCCATTGCTGCAAGAGTCGCTT
TATGCCCTGCCCATTGACGATCACATCAAGCGGGGCTATTCCCACACCGCCGCCATCGCCCGCGCGCTCTGCGCTAACAG
CCCTTGCAAACCCGTTTATAACAAATTACGCGCCATAAAAAACATCACCTACGCCGGGCAAAGTTTGGAGTTTCGCAAGC
AAAACCCCAAGGGTTTTGTTTTTAAAGGCGATTCTCGTTTGGCTTACTTTTTGGTGGATGATGTCTTAACTACAGGCACG
ACCCTGTGCCAAGCGATTCAAACCCTCAAAGCCGCGGGGGTAAAAGTCGCCTTTGCGCTGGTGCTGGCAAAAGCCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(150-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K2YBR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

49.474

100

0.508
  ctsW Campylobacter jejuni subsp. jejuni 81-176

35.417

100

0.368

Multiple sequence alignment