Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACKEGZ_RS04625 Genome accession   NZ_CP175957
Coordinates   984478..985827 (-) Length   449 a.a.
NCBI ID   WP_079206950.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain RAf490     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 979478..990827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKEGZ_RS04605 (ACKEGZ_04605) - 979780..981210 (-) 1431 WP_154469454.1 redoxin domain-containing protein -
  ACKEGZ_RS04610 (ACKEGZ_04610) - 981425..982270 (+) 846 WP_064970602.1 GLPGLI family protein -
  ACKEGZ_RS04615 (ACKEGZ_04615) - 982312..982776 (-) 465 WP_064970605.1 heme-binding domain-containing protein -
  ACKEGZ_RS04620 (ACKEGZ_04620) - 982788..984431 (-) 1644 WP_154469453.1 Ig-like domain-containing protein -
  ACKEGZ_RS04625 (ACKEGZ_04625) radA 984478..985827 (-) 1350 WP_079206950.1 DNA repair protein RadA Machinery gene
  ACKEGZ_RS04630 (ACKEGZ_04630) - 985920..986684 (+) 765 WP_154469452.1 enoyl-CoA hydratase/isomerase family protein -
  ACKEGZ_RS04635 (ACKEGZ_04635) - 986761..988896 (-) 2136 WP_154469451.1 S8 family peptidase -
  ACKEGZ_RS04640 (ACKEGZ_04640) - 989246..989743 (+) 498 WP_154469450.1 RNA polymerase sigma factor -
  ACKEGZ_RS04645 (ACKEGZ_04645) - 989800..990624 (+) 825 WP_154469449.1 FecR family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49680.19 Da        Isoelectric Point: 7.4843

>NTDB_id=966422 ACKEGZ_RS04625 WP_079206950.1 984478..985827(-) (radA) [Riemerella anatipestifer strain RAf490]
MAKLKTVYYCQNCGSQHSKWHGQCQNCGQWNTLVEEIAEKTTSKNYAGDFGRQHLINIIEVETQAEQRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKILYVSGEESASQIKMRADRLTELQNPNCFLYTETSIEKILHEAKKL
QPDFMIVDSIQTLHSQVMESSPGTVSQIRECASEVIKFAKATNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTAEIGIYEMISAGLKEIKNPSEVLITKKSEEFSGNAVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDAKRLNMLLAVLEKRSGFQLGAKDVFLNITGGIKTDDPALDLAVVAAILSSNEDIAVSEHYCFAGEIGLSGEIRPV
PQIEKRISEAEKLGYHKIFVSKQNKIPKKKHNIKIVEVSKIEDFHEEIF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=966422 ACKEGZ_RS04625 WP_079206950.1 984478..985827(-) (radA) [Riemerella anatipestifer strain RAf490]
GTGGCTAAATTAAAAACAGTATATTATTGTCAGAATTGTGGTTCGCAACATTCCAAATGGCACGGACAATGCCAAAATTG
TGGACAATGGAACACCTTAGTGGAAGAGATTGCAGAGAAAACAACCTCTAAAAATTATGCAGGAGATTTCGGAAGGCAAC
ATCTCATCAATATCATAGAAGTAGAAACACAAGCCGAGCAACGCATTAAAACTCCAAGCGAAGAACTTAACAGGGTTTTG
GGTGGCGGTATTGTTTTAGGTTCGGTAACTCTTATCGGAGGCGAACCAGGTATAGGGAAATCTACATTACTGTTGCAATT
AGCCCTTAAAATGAAGAAAAAAATCCTCTATGTTTCGGGGGAAGAAAGTGCCTCGCAAATCAAAATGAGAGCAGATAGAC
TAACGGAACTTCAAAATCCGAATTGTTTTTTATACACCGAAACTTCAATAGAGAAAATTTTGCACGAAGCCAAAAAACTT
CAGCCCGATTTTATGATTGTGGACTCTATACAAACTTTACATTCGCAGGTGATGGAAAGTTCCCCAGGTACGGTGTCTCA
GATTAGAGAATGTGCTTCGGAAGTTATAAAGTTTGCAAAAGCGACTAACACGCCTGTTTTTTTAGTGGGACATATTACTA
AAGATGGGCAAATAGCTGGACCAAAAGTATTGGAGCATATGGTAGATGTAGTTCTTAATTTTGATGGTGATAGAAACCAT
TTGTTTAGACTTTTAAGAGCGAATAAAAATCGTTTTGGTTCTACTGCGGAGATTGGTATTTATGAGATGATTTCAGCAGG
ATTGAAAGAAATTAAAAATCCTTCGGAAGTGCTTATTACCAAAAAATCCGAGGAATTTTCAGGAAATGCGGTGGCAGTAA
CGCTAGAAGGTAACCGCCCTATGTTGCTAGAAATACAAGCCCTTGTAAGTACAGCCGTGTATGGTACACCACAGAGAAGT
TCTACGGGTTTTGATGCTAAAAGGCTCAATATGCTTTTGGCAGTTTTGGAGAAACGCTCTGGTTTCCAACTCGGTGCTAA
AGATGTATTCTTAAATATTACAGGAGGTATTAAAACGGACGACCCTGCTTTAGATTTGGCTGTGGTAGCTGCTATCTTGT
CTTCCAACGAGGATATTGCAGTGTCGGAGCATTATTGTTTTGCTGGAGAGATTGGTCTTAGTGGAGAGATTCGTCCTGTG
CCACAAATAGAAAAACGCATCTCCGAAGCCGAAAAATTAGGCTATCATAAGATATTTGTTTCTAAACAAAATAAGATACC
AAAGAAAAAACACAATATAAAAATTGTGGAAGTTTCTAAAATAGAAGACTTTCACGAAGAGATATTTTAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(336-424)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

47.473

100

0.481
  radA Streptococcus pneumoniae Rx1

47.368

100

0.481
  radA Streptococcus pneumoniae D39

47.368

100

0.481
  radA Streptococcus pneumoniae TIGR4

47.368

100

0.481
  radA Streptococcus pneumoniae R6

47.368

100

0.481
  radA Streptococcus mitis SK321

47.241

100

0.477
  radA/sms Bacillus subtilis subsp. subtilis str. 168

48.611

96.214

0.468

Multiple sequence alignment