Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MKY07_RS19660 Genome accession   NZ_CP150208
Coordinates   3927229..3927786 (-) Length   185 a.a.
NCBI ID   WP_008408356.1    Uniprot ID   -
Organism   Solibacillus sp. FSL W7-1472     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3922229..3932786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY07_RS19635 (MKY07_19635) rbsD 3923009..3923398 (+) 390 WP_065217708.1 D-ribose pyranase -
  MKY07_RS19640 (MKY07_19640) - 3923414..3924910 (+) 1497 WP_008408348.1 sugar ABC transporter ATP-binding protein -
  MKY07_RS19645 (MKY07_19645) rbsC 3924897..3925838 (+) 942 WP_014822355.1 ribose ABC transporter permease -
  MKY07_RS19650 (MKY07_19650) rbsB 3925854..3926792 (+) 939 WP_339263406.1 ribose ABC transporter substrate-binding protein RbsB -
  MKY07_RS19655 (MKY07_19655) rpsR 3926948..3927187 (-) 240 WP_172954456.1 30S ribosomal protein S18 -
  MKY07_RS19660 (MKY07_19660) ssbA 3927229..3927786 (-) 558 WP_008408356.1 single-stranded DNA-binding protein Machinery gene
  MKY07_RS19665 (MKY07_19665) rpsF 3927825..3928115 (-) 291 WP_008408357.1 30S ribosomal protein S6 -
  MKY07_RS19670 (MKY07_19670) ychF 3928325..3929425 (-) 1101 WP_339263407.1 redox-regulated ATPase YchF -
  MKY07_RS19675 (MKY07_19675) - 3929554..3929754 (-) 201 WP_008408362.1 DUF951 domain-containing protein -
  MKY07_RS19680 (MKY07_19680) - 3929758..3930663 (-) 906 WP_008408364.1 mechanosensitive ion channel family protein -
  MKY07_RS19685 (MKY07_19685) yyaC 3930779..3931405 (+) 627 WP_008408365.1 spore protease YyaC -
  MKY07_RS19690 (MKY07_19690) - 3931322..3932029 (-) 708 WP_065217711.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20242.15 Da        Isoelectric Point: 4.7719

>NTDB_id=966422 MKY07_RS19660 WP_008408356.1 3927229..3927786(-) (ssbA) [Solibacillus sp. FSL W7-1472]
MINRVVLVGRLTKDPELRYTPSGVPMARFTIAVNRTFSSQSGEREADFIGCIAWRKQAENLANFMRKGSLIGVEGRIQTG
SFEGQDGKRVYTTDVVADSVQFLEPRGGANASQGAPSQQYGGGQNYGGQPSYNQPNQQFGGAQSQDSYGSYQQPAQNQQN
YTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=966422 MKY07_RS19660 WP_008408356.1 3927229..3927786(-) (ssbA) [Solibacillus sp. FSL W7-1472]
ATGATTAACCGTGTCGTATTAGTCGGAAGGCTTACAAAGGATCCAGAGCTTCGTTACACACCGAGTGGAGTTCCAATGGC
ACGTTTTACGATTGCCGTAAACCGTACATTTTCGAGCCAGTCGGGTGAACGCGAAGCAGATTTCATAGGCTGTATCGCCT
GGAGAAAACAAGCTGAAAACTTAGCAAACTTCATGAGAAAAGGGAGTTTGATTGGTGTAGAGGGTCGTATTCAAACAGGT
AGCTTTGAAGGACAAGATGGAAAGCGTGTGTATACAACAGATGTCGTTGCTGATTCAGTGCAGTTCTTAGAACCACGTGG
AGGAGCTAATGCATCACAAGGTGCACCAAGCCAACAATACGGTGGAGGGCAAAATTATGGTGGTCAGCCATCTTATAATC
AGCCTAACCAACAATTTGGAGGCGCGCAATCACAGGATTCTTACGGTTCTTATCAACAGCCAGCTCAAAATCAGCAAAAC
TATACACGTGTAGATGAAGATCCATTTGCAAACAGTAAAGGACCGATTGAAGTTTCTGAAGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.376

100

0.557
  ssb Latilactobacillus sakei subsp. sakei 23K

49.462

100

0.497

Multiple sequence alignment