Detailed information NTG0966416

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: ACKEGZ_RS03250
• Genome accession: NZ_CP175957
• Coordinates: 680919..682091 (+)
• Length: 390 a.a.
• NCBI ID: WP_229578793.1
• Uniprot ID: -
• Organism: Riemerella anatipestifer strain RAf490
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 675919..687091

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKEGZ_RS03220 (ACKEGZ_03220)	folK	676684..677133 (-)	450	WP_004916980.1	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	-
ACKEGZ_RS03225 (ACKEGZ_03225)	sppA	677155..678909 (+)	1755	WP_229578791.1	signal peptide peptidase SppA	-
ACKEGZ_RS03230 (ACKEGZ_03230)	dtd	678992..679438 (-)	447	WP_154468817.1	D-aminoacyl-tRNA deacylase	-
ACKEGZ_RS03235 (ACKEGZ_03235)	-	679444..679908 (-)	465	WP_229578792.1	hypothetical protein	-
ACKEGZ_RS03240 (ACKEGZ_03240)	greA	680010..680477 (+)	468	WP_004916971.1	transcription elongation factor GreA	-
ACKEGZ_RS03245 (ACKEGZ_03245)	-	680496..680882 (+)	387	WP_004916969.1	HIT family protein	-
ACKEGZ_RS03250 (ACKEGZ_03250)	clpX	680919..682091 (+)	1173	WP_229578793.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
ACKEGZ_RS03255 (ACKEGZ_03255)	-	682178..684142 (+)	1965	WP_229578794.1	T9SS type A sorting domain-containing protein	-
ACKEGZ_RS03260 (ACKEGZ_03260)	-	684154..684408 (+)	255	WP_229578795.1	hypothetical protein	-
ACKEGZ_RS03265 (ACKEGZ_03265)	-	684470..685741 (+)	1272	WP_394812264.1	TlpA family protein disulfide reductase	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 43899.49 Da
• Isoelectric Point: 5.7920

>NTDB_id=966416 ACKEGZ_RS03250 WP_229578793.1 680919..682091(+) (clpX) [Riemerella anatipestifer strain RAf490]
MNNNQCSFCGRHRKEVQMLVSGQNGLICEHCIEQAHAFVKDNIQKEEFSPVNTLSELKKPREIKKTLDEYVIGQDQAKKQ
LSIAVYNHYKRLLHSSTKKDNDVEIEKSNIIMIGETGTGKTLLAKTIARELNVPFCIVDATILTEAGYVGEDVESILSRL
LMVADYDVEKAEKGIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKYIQVNTQNILF
IAGGAFDGIKEIIERRLNKQAIGFSKEKLDSEKDLAQILPQVNSTDLRKFGLIPELLGRFPVITYLDQLTKETMVRIMKE
PKNSIVNQFKALFKIDGIDLEFTDEALEKIVDETFEKGLGARGLRGTTEKVLEDYMFDIDIISKNKITIN

Nucleotide

• Length: 1173 bp

>NTDB_id=966416 ACKEGZ_RS03250 WP_229578793.1 680919..682091(+) (clpX) [Riemerella anatipestifer strain RAf490]
ATGAATAATAACCAGTGTTCTTTTTGCGGAAGACATCGTAAAGAAGTTCAAATGCTAGTTTCGGGACAAAATGGACTCAT
CTGCGAACATTGTATAGAACAAGCTCACGCATTTGTTAAAGACAATATCCAGAAAGAAGAGTTTTCTCCCGTAAATACCC
TCTCCGAACTAAAGAAACCTAGAGAAATTAAAAAAACTCTAGACGAATATGTCATCGGACAAGACCAAGCAAAAAAACAA
CTTTCCATAGCTGTCTATAACCATTATAAAAGACTTCTACATTCTTCAACAAAAAAAGACAATGATGTTGAGATAGAAAA
ATCTAACATCATTATGATAGGTGAAACAGGTACAGGAAAAACCCTTTTAGCAAAAACCATCGCTAGAGAACTTAATGTAC
CTTTTTGTATTGTAGATGCCACAATACTTACCGAAGCTGGTTATGTAGGCGAAGATGTAGAGAGTATTTTATCTAGACTT
CTTATGGTCGCTGATTACGATGTAGAGAAAGCCGAAAAAGGCATTGTATTCATAGATGAAATAGATAAAATAGCGAGAAA
ATCAGACAATCCAAGCATCACAAGAGATGTATCAGGAGAAGGTGTACAACAAGGATTATTAAAGTTATTGGAAGGAAGCA
TTGTAAATGTACCGCCTCAAGGAGGAAGAAAACACCCTGACCAAAAATACATACAAGTAAACACACAAAATATCCTATTC
ATTGCTGGAGGGGCTTTTGATGGTATAAAAGAAATTATAGAAAGGAGACTAAACAAACAAGCCATAGGCTTTAGTAAAGA
AAAACTAGATTCCGAAAAAGATTTGGCACAGATATTGCCACAAGTAAACTCAACGGATTTGAGAAAGTTCGGATTAATTC
CAGAACTTTTAGGTAGATTCCCTGTAATTACTTATTTAGACCAACTAACCAAAGAGACCATGGTAAGAATAATGAAAGAG
CCAAAAAACTCTATTGTTAATCAATTCAAAGCTCTTTTCAAAATAGACGGTATAGATTTAGAGTTCACAGACGAAGCCTT
AGAGAAAATTGTAGATGAAACTTTTGAAAAAGGATTAGGTGCAAGAGGACTTAGAGGCACTACAGAAAAGGTTTTAGAAG
ATTACATGTTTGATATAGATATAATATCCAAAAATAAAATTACAATAAATTAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (106-303)

• ClpX C4-type zinc finger (zf-C4_ClpX) (5-40)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (309-378)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	52.785	96.667	0.51
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	52.243	97.179	0.508