Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MKY59_RS21765 Genome accession   NZ_CP150203
Coordinates   4790739..4791227 (-) Length   162 a.a.
NCBI ID   WP_236416569.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL W8-0426     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4785739..4796227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY59_RS21730 (MKY59_21730) - 4785765..4786298 (-) 534 WP_339273817.1 SLOG family protein -
  MKY59_RS21735 (MKY59_21735) - 4786585..4787100 (-) 516 WP_339273818.1 hypothetical protein -
  MKY59_RS21740 (MKY59_21740) - 4787097..4788029 (-) 933 WP_339273819.1 hypothetical protein -
  MKY59_RS21745 (MKY59_21745) - 4788203..4789162 (-) 960 WP_339273820.1 tyrosine-type recombinase/integrase -
  MKY59_RS21755 (MKY59_21755) - 4789713..4790180 (-) 468 WP_339273821.1 general stress protein -
  MKY59_RS21760 (MKY59_21760) - 4790388..4790624 (+) 237 WP_236416567.1 hypothetical protein -
  MKY59_RS21765 (MKY59_21765) nucA/comI 4790739..4791227 (-) 489 WP_236416569.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  MKY59_RS21770 (MKY59_21770) - 4791995..4792477 (+) 483 WP_339273822.1 hypothetical protein -
  MKY59_RS21775 (MKY59_21775) - 4792582..4792911 (-) 330 WP_236416573.1 DUF1904 family protein -
  MKY59_RS21780 (MKY59_21780) - 4793075..4793185 (-) 111 WP_236416574.1 YjcZ family sporulation protein -
  MKY59_RS21785 (MKY59_21785) - 4793296..4793958 (-) 663 WP_339273823.1 hypothetical protein -
  MKY59_RS21790 (MKY59_21790) - 4794142..4794318 (-) 177 WP_236416580.1 hypothetical protein -
  MKY59_RS21805 (MKY59_21805) - 4794851..4795015 (-) 165 WP_236416582.1 hypothetical protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 18008.60 Da        Isoelectric Point: 10.0531

>NTDB_id=966250 MKY59_RS21765 WP_236416569.1 4790739..4791227(-) (nucA/comI) [Paenibacillus sp. FSL W8-0426]
MSRTHRKKRRNKGFGSLKKKGLTLLTLMVVLFFAWFKGEIPLDLPAWLDQGTTQGVDHTITFPSERYPETAAHIKSAIKA
GHSDVCTIDRDGAEANRELSLKGVPVKKGYDRDEWPMAMCAEGGANADIQYITPKDNRGAGSWVGNQLSTYPDGTRVRFV
VK

Nucleotide


Download         Length: 489 bp        

>NTDB_id=966250 MKY59_RS21765 WP_236416569.1 4790739..4791227(-) (nucA/comI) [Paenibacillus sp. FSL W8-0426]
ATGAGCAGAACGCACAGAAAAAAACGAAGAAACAAAGGATTCGGCAGCTTAAAAAAGAAGGGTTTGACGCTTCTTACTTT
GATGGTGGTGCTGTTCTTTGCTTGGTTTAAGGGAGAGATCCCGCTGGATTTGCCTGCATGGCTTGATCAAGGCACCACTC
AGGGTGTGGATCACACGATTACGTTTCCGTCCGAACGCTACCCCGAGACTGCAGCGCATATTAAATCCGCTATTAAAGCA
GGACATTCCGATGTCTGCACCATCGATCGGGACGGAGCCGAAGCCAATCGGGAATTGTCGCTTAAGGGCGTGCCGGTCAA
AAAAGGGTATGATCGCGACGAATGGCCGATGGCCATGTGCGCCGAAGGTGGCGCGAATGCGGATATCCAATATATTACGC
CAAAGGATAACCGTGGAGCAGGATCTTGGGTCGGGAATCAACTCAGTACATATCCGGACGGGACCCGGGTTCGATTCGTA
GTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(65-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.103

71.605

0.488

Multiple sequence alignment