Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   NYE32_RS01670 Genome accession   NZ_CP150201
Coordinates   323549..324868 (+) Length   439 a.a.
NCBI ID   WP_156685195.1    Uniprot ID   -
Organism   Streptococcus sp. FSL R7-0248     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 318549..329868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE32_RS01645 (NYE32_01645) - 319423..320187 (+) 765 WP_021143582.1 ABC transporter ATP-binding protein -
  NYE32_RS01650 (NYE32_01650) - 320187..320897 (+) 711 WP_002883761.1 ABC transporter ATP-binding protein -
  NYE32_RS01655 (NYE32_01655) - 321032..321691 (+) 660 WP_037600377.1 CBS and ACT domain-containing protein -
  NYE32_RS01660 (NYE32_01660) cysK 321840..322766 (-) 927 WP_061652497.1 cysteine synthase A -
  NYE32_RS01665 (NYE32_01665) - 322868..323494 (-) 627 WP_061652496.1 YigZ family protein -
  NYE32_RS01670 (NYE32_01670) comFA/cflA 323549..324868 (+) 1320 WP_156685195.1 DEAD/DEAH box helicase Machinery gene
  NYE32_RS01675 (NYE32_01675) - 324849..325511 (+) 663 WP_156685196.1 ComF family protein -
  NYE32_RS01680 (NYE32_01680) raiA 325590..326138 (+) 549 WP_002883786.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 439 a.a.        Molecular weight: 50689.93 Da        Isoelectric Point: 9.5756

>NTDB_id=966152 NYE32_RS01670 WP_156685195.1 323549..324868(+) (comFA/cflA) [Streptococcus sp. FSL R7-0248]
MVPKEYYGRLFTKEQLPVNYHPEALTLESMIKVDKQLRCKRCYSWIEEDWQLPGGQYYCRACIVFGRNQEGKELYYFPSK
TSEIEFPVLKWFGELTPYQAEISEKLLRTYQKQKDSLVHAVTGAGKTEMIYNIVAYVLENKGHVAIASPRVDVCRELFLR
MKRDFNCSISLLHAEGEPYDGSPLVIATTHQLLKFYQSFDLVIVDEVDAYPFVGNVMLNHAVEQAKTETGRFIYLTATST
LSLEEQVRLGTLEKHHLARRFHGNPLVLPKFFWQGRLQKSLTRGKLPRPLLYQIKKQRKSKFPLLIFFPNIAIGEKFTSI
LQKYLPDEKMAFVSSKSEKRSTIVEKFRKKELSILVTTTILERGVTFPQVDVFVCMANHHLYTSSSLIQIGGRVGRSPDR
PTGKLYFFHEGLSKSMLCCREEIKVMNKKGGFNNEVSTM

Nucleotide


Download         Length: 1320 bp        

>NTDB_id=966152 NYE32_RS01670 WP_156685195.1 323549..324868(+) (comFA/cflA) [Streptococcus sp. FSL R7-0248]
ATGGTACCTAAAGAATATTATGGACGACTATTTACGAAAGAGCAGTTGCCAGTGAACTATCACCCAGAGGCTTTAACATT
AGAAAGTATGATAAAGGTCGATAAACAACTTAGATGTAAAAGATGTTACAGTTGGATAGAGGAAGATTGGCAATTACCGG
GAGGTCAGTATTATTGTAGAGCATGTATTGTCTTTGGTAGAAACCAAGAAGGAAAAGAACTTTATTATTTTCCTTCCAAA
ACATCAGAAATTGAATTTCCTGTTTTGAAGTGGTTTGGAGAACTGACTCCCTATCAAGCTGAGATCTCAGAGAAACTTTT
GAGAACTTATCAAAAACAGAAAGATAGTCTCGTACATGCTGTGACCGGTGCTGGTAAGACAGAAATGATTTATAACATCG
TTGCCTATGTTCTGGAAAATAAAGGTCATGTAGCTATCGCAAGTCCTAGGGTTGATGTTTGTCGAGAATTATTTCTACGT
ATGAAGAGGGATTTTAATTGTAGTATTTCCCTGCTTCATGCTGAGGGTGAACCATATGATGGTAGTCCGCTTGTAATAGC
TACCACACATCAACTACTAAAGTTTTACCAGAGTTTTGACTTAGTTATTGTAGATGAAGTAGATGCATATCCTTTTGTAG
GCAATGTCATGTTAAATCATGCTGTAGAACAGGCGAAGACCGAAACCGGTCGATTTATTTACTTAACAGCGACTTCAACA
TTATCTTTAGAAGAGCAAGTTCGACTTGGGACTTTAGAAAAGCATCACCTTGCTAGACGTTTCCATGGAAATCCTTTAGT
ACTTCCTAAATTCTTCTGGCAGGGCAGATTACAAAAATCTCTGACAAGAGGCAAGCTTCCAAGACCTCTTCTTTATCAGA
TTAAAAAGCAACGTAAATCAAAATTTCCTCTATTAATCTTCTTTCCAAATATAGCGATAGGTGAAAAGTTTACAAGTATT
CTACAAAAATATCTTCCAGATGAAAAAATGGCCTTTGTTTCCTCAAAAAGCGAGAAGCGTTCAACTATCGTAGAGAAGTT
CCGAAAAAAAGAACTGTCTATCTTAGTGACAACAACTATCCTCGAACGTGGTGTAACCTTTCCACAAGTAGATGTTTTTG
TTTGTATGGCAAATCATCACTTATACACTAGTTCGAGTCTTATTCAGATAGGAGGTCGAGTTGGAAGATCTCCAGATAGA
CCGACAGGAAAGCTTTATTTCTTTCATGAAGGACTATCCAAATCAATGCTTTGTTGTCGAGAAGAAATAAAAGTTATGAA
TAAAAAAGGAGGATTTAACAATGAAGTGTCTACTATGTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(290-396)

Type III restriction enzyme, res subunit (ResIII)

(94-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae Rx1

55.22

98.178

0.542
  comFA/cflA Streptococcus pneumoniae D39

55.22

98.178

0.542
  comFA/cflA Streptococcus pneumoniae R6

55.22

98.178

0.542
  comFA/cflA Streptococcus pneumoniae TIGR4

55.22

98.178

0.542
  comFA/cflA Streptococcus mitis NCTC 12261

54.378

98.861

0.538
  comFA/cflA Streptococcus mitis SK321

53.828

98.178

0.528
  comFA Lactococcus lactis subsp. cremoris KW2

46.429

95.672

0.444
  comFA Latilactobacillus sakei subsp. sakei 23K

37.241

99.089

0.369

Multiple sequence alignment