Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   NSQ79_RS01800 Genome accession   NZ_CP150200
Coordinates   341329..342648 (+) Length   439 a.a.
NCBI ID   WP_164332344.1    Uniprot ID   A0AAW7PLV8
Organism   Streptococcus sp. FSL W7-1342     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336329..347648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ79_RS01775 (NSQ79_01775) - 337173..337937 (+) 765 WP_045771733.1 ABC transporter ATP-binding protein -
  NSQ79_RS01780 (NSQ79_01780) - 337937..338647 (+) 711 WP_014633927.1 ABC transporter ATP-binding protein -
  NSQ79_RS01785 (NSQ79_01785) - 338782..339441 (+) 660 WP_045771734.1 CBS and ACT domain-containing protein -
  NSQ79_RS01790 (NSQ79_01790) cysK 339620..340546 (-) 927 WP_002883742.1 cysteine synthase A -
  NSQ79_RS01795 (NSQ79_01795) - 340648..341274 (-) 627 WP_045771735.1 YigZ family protein -
  NSQ79_RS01800 (NSQ79_01800) comFA/cflA 341329..342648 (+) 1320 WP_164332344.1 DEAD/DEAH box helicase Machinery gene
  NSQ79_RS01805 (NSQ79_01805) - 342629..343291 (+) 663 WP_013990091.1 ComF family protein -
  NSQ79_RS01810 (NSQ79_01810) raiA 343370..343918 (+) 549 WP_002883786.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 439 a.a.        Molecular weight: 50625.61 Da        Isoelectric Point: 8.9952

>NTDB_id=966082 NSQ79_RS01800 WP_164332344.1 341329..342648(+) (comFA/cflA) [Streptococcus sp. FSL W7-1342]
MVPKEYYGRLFTKEQLPVDYHSEAFTLESMIKVDKQLRCKRCYSQIEEDWQLPEGQYYCRACIVFGRNQEGKELYYFPSK
TSEIEFPALKWLGELTPYQAEVSEKLLETYQKQKDSLVHAVTGAGKTEMIYKIVAYVLESKGNVAIASPRVDVCRELFLR
MQRDFTCSISLLHAESEPYDGSPLVIATTHQLLKFYQNFDLVIVDEVDAFPFVGNVMLNHAVEQAKKETGRYIYLTATST
ISLEEQVRLGALEKHHLARRFHGNPLVLPKFFWQGRLQKSLMRGKLPRPLVYQIKKQRKSKIPLLIFFPNIAIGEKFTSI
LQKYLPDEKMAFVSSKSEERSATVEQFREKELSILVTTTILERGVTFPQVDVFVCMANHHLYTSSSLIQIGGRVGRSPDR
PTGKLYFFHEGLSKSMLRCREEIKVMNKKGGFNNEVSTM

Nucleotide


Download         Length: 1320 bp        

>NTDB_id=966082 NSQ79_RS01800 WP_164332344.1 341329..342648(+) (comFA/cflA) [Streptococcus sp. FSL W7-1342]
ATGGTACCTAAAGAATATTATGGACGACTATTTACGAAAGAACAGTTGCCAGTGGACTATCACTCAGAGGCTTTTACATT
AGAAAGCATGATAAAGGTCGATAAACAACTTAGATGTAAAAGATGTTACAGTCAGATAGAGGAAGATTGGCAATTACCGG
AAGGTCAGTATTATTGCAGAGCATGTATTGTCTTTGGCAGAAACCAAGAAGGAAAAGAACTTTATTATTTTCCTTCAAAA
ACATCTGAAATTGAATTTCCTGCTTTGAAGTGGTTGGGGGAACTGACTCCCTATCAAGCTGAGGTCTCAGAGAAGCTTTT
AGAAACATATCAAAAACAGAAAGACAGCCTCGTACATGCTGTGACTGGTGCTGGGAAGACCGAGATGATTTATAAAATCG
TTGCCTATGTTCTTGAAAGTAAAGGTAATGTAGCTATCGCAAGTCCTCGGGTTGATGTTTGTCGAGAGTTATTTCTTCGT
ATGCAGAGGGATTTTACTTGTAGTATTTCTCTGCTTCATGCTGAGAGTGAACCATATGATGGTAGTCCGCTTGTAATAGC
TACCACCCATCAACTACTAAAGTTTTACCAGAACTTTGACCTAGTTATCGTTGATGAGGTTGATGCATTCCCTTTTGTAG
GAAATGTCATGTTAAATCATGCTGTGGAGCAGGCAAAGAAGGAAACCGGTCGCTATATTTACTTAACAGCGACTTCTACA
ATATCTTTAGAAGAGCAAGTTCGACTTGGAGCTTTAGAAAAACATCACCTTGCCAGACGTTTCCATGGAAATCCTTTAGT
ACTTCCTAAATTCTTCTGGCAAGGAAGATTACAAAAATCTCTAATGAGAGGCAAGCTTCCAAGACCTCTTGTTTATCAGA
TTAAAAAGCAACGTAAATCAAAGATTCCTCTATTAATATTTTTCCCAAATATAGCGATAGGTGAAAAGTTTACTAGCATT
CTGCAAAAATATCTTCCAGATGAAAAAATGGCCTTTGTTTCTTCAAAAAGCGAGGAGCGTTCAGCTACCGTAGAGCAGTT
CCGGGAAAAAGAGTTATCCATCTTAGTGACAACAACTATCCTTGAACGTGGTGTAACCTTTCCACAAGTAGATGTTTTTG
TTTGTATGGCAAATCATCACTTATACACTAGTTCGAGTCTTATTCAGATAGGAGGTCGAGTTGGAAGATCCCCAGATAGA
CCGACAGGAAAGCTTTATTTCTTTCATGAAGGACTATCCAAATCTATGCTTCGTTGTCGAGAAGAAATAAAGGTTATGAA
TAAAAAAGGAGGATTTAACAATGAAGTGTCTACTATGTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(94-170)

Helicase conserved C-terminal domain (Helicase_C)

(290-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae Rx1

56.148

98.178

0.551
  comFA/cflA Streptococcus pneumoniae D39

56.148

98.178

0.551
  comFA/cflA Streptococcus pneumoniae R6

56.148

98.178

0.551
  comFA/cflA Streptococcus pneumoniae TIGR4

56.148

98.178

0.551
  comFA/cflA Streptococcus mitis NCTC 12261

55.3

98.861

0.547
  comFA/cflA Streptococcus mitis SK321

54.988

98.178

0.54
  comFA Lactococcus lactis subsp. cremoris KW2

45.476

95.672

0.435
  comFA Latilactobacillus sakei subsp. sakei 23K

37.844

99.317

0.376

Multiple sequence alignment