Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NST06_RS05135 Genome accession   NZ_CP150197
Coordinates   1023070..1023648 (+) Length   192 a.a.
NCBI ID   WP_034621820.1    Uniprot ID   -
Organism   Bacillus sp. FSL P4-0322     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1018070..1028648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST06_RS05115 (NST06_05115) - 1018565..1019860 (-) 1296 WP_339241101.1 globin-coupled sensor protein -
  NST06_RS05120 (NST06_05120) - 1019952..1021484 (-) 1533 WP_125587309.1 FAD-dependent oxidoreductase -
  NST06_RS05125 (NST06_05125) - 1021627..1022487 (+) 861 WP_024425480.1 SDR family oxidoreductase -
  NST06_RS05130 (NST06_05130) - 1022544..1022780 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  NST06_RS05135 (NST06_05135) comK 1023070..1023648 (+) 579 WP_034621820.1 competence protein ComK Regulator
  NST06_RS05140 (NST06_05140) - 1023948..1024430 (+) 483 WP_024426543.1 hypothetical protein -
  NST06_RS05145 (NST06_05145) - 1024697..1024975 (+) 279 WP_034621828.1 barstar family protein -
  NST06_RS05150 (NST06_05150) ceuB 1025137..1026087 (+) 951 WP_024426541.1 ABC transporter permease Machinery gene
  NST06_RS05155 (NST06_05155) - 1026080..1027030 (+) 951 WP_024425487.1 iron chelate uptake ABC transporter family permease subunit -
  NST06_RS05160 (NST06_05160) - 1027021..1027779 (+) 759 WP_024426539.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22384.39 Da        Isoelectric Point: 8.7996

>NTDB_id=965957 NST06_RS05135 WP_034621820.1 1023070..1023648(+) (comK) [Bacillus sp. FSL P4-0322]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSFGDTVVTFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=965957 NST06_RS05135 WP_034621820.1 1023070..1023648(+) (comK) [Bacillus sp. FSL P4-0322]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCAGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCCCTGCAAATTATTGAACGCA
GCTGCAGATTCTTCGGCTCAAGCTATGCAGGCAGAAAGGCGGGAACATACGAAGTAACAGGAATTTCTCACAAACCCCCA
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACTTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAAGAATCATCCTTCGGAGACACGGTGGTCACCTTTACAAATGAGCAAACCGTCAAACTTG
ATGTCTCATATAAATCATTTGAGAGTCAGGTGCACCGGACAGCATATCTCCGAACGAAATTTCAAGATCGTCTTGATGGC
GGTCTTCCGAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAATCTCGTATACGATTTTATATTAAGGGA
GCTTCGTAACAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625

Multiple sequence alignment