Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NSQ10_RS16610 Genome accession   NZ_CP150196
Coordinates   3204408..3205097 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus sp. FSL R5-0432     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3199408..3210097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ10_RS16575 (NSQ10_16575) - 3199485..3199967 (-) 483 WP_039181805.1 flagellar protein FlgN -
  NSQ10_RS16580 (NSQ10_16580) flgM 3199986..3200249 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSQ10_RS16585 (NSQ10_16585) - 3200329..3200748 (-) 420 WP_039181808.1 TIGR03826 family flagellar region protein -
  NSQ10_RS16590 (NSQ10_16590) - 3200805..3201491 (-) 687 WP_064497978.1 ComF family protein -
  NSQ10_RS16595 (NSQ10_16595) - 3201488..3201781 (-) 294 WP_039181811.1 competence protein ComFB -
  NSQ10_RS16600 (NSQ10_16600) comFA 3201831..3203228 (-) 1398 WP_339208369.1 DEAD/DEAH box helicase Machinery gene
  NSQ10_RS16605 (NSQ10_16605) - 3203349..3204191 (-) 843 WP_039181815.1 DegV family protein -
  NSQ10_RS16610 (NSQ10_16610) degU 3204408..3205097 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  NSQ10_RS16615 (NSQ10_16615) degS 3205162..3206337 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  NSQ10_RS16620 (NSQ10_16620) - 3206559..3207227 (+) 669 WP_012011434.1 YigZ family protein -
  NSQ10_RS16625 (NSQ10_16625) - 3207212..3208303 (+) 1092 WP_251181031.1 LCP family protein -
  NSQ10_RS16630 (NSQ10_16630) - 3208339..3209406 (-) 1068 WP_034660156.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=965939 NSQ10_RS16610 WP_008348273.1 3204408..3205097(-) (degU) [Bacillus sp. FSL R5-0432]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=965939 NSQ10_RS16610 WP_008348273.1 3204408..3205097(-) (degU) [Bacillus sp. FSL R5-0432]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGAGCGAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACACTCATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ATTTAGTAAATGAATTCCGACGCCTAGCAACTAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGCGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATTGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment