Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NSQ10_RS16600 Genome accession   NZ_CP150196
Coordinates   3201831..3203228 (-) Length   465 a.a.
NCBI ID   WP_339208369.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0432     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3196831..3208228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ10_RS16565 (NSQ10_16565) flgL 3197031..3197939 (-) 909 WP_039181799.1 flagellar hook-associated protein FlgL -
  NSQ10_RS16570 (NSQ10_16570) flgK 3197949..3199469 (-) 1521 WP_039181802.1 flagellar hook-associated protein FlgK -
  NSQ10_RS16575 (NSQ10_16575) - 3199485..3199967 (-) 483 WP_039181805.1 flagellar protein FlgN -
  NSQ10_RS16580 (NSQ10_16580) flgM 3199986..3200249 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSQ10_RS16585 (NSQ10_16585) - 3200329..3200748 (-) 420 WP_039181808.1 TIGR03826 family flagellar region protein -
  NSQ10_RS16590 (NSQ10_16590) - 3200805..3201491 (-) 687 WP_064497978.1 ComF family protein -
  NSQ10_RS16595 (NSQ10_16595) - 3201488..3201781 (-) 294 WP_039181811.1 competence protein ComFB -
  NSQ10_RS16600 (NSQ10_16600) comFA 3201831..3203228 (-) 1398 WP_339208369.1 DEAD/DEAH box helicase Machinery gene
  NSQ10_RS16605 (NSQ10_16605) - 3203349..3204191 (-) 843 WP_039181815.1 DegV family protein -
  NSQ10_RS16610 (NSQ10_16610) degU 3204408..3205097 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  NSQ10_RS16615 (NSQ10_16615) degS 3205162..3206337 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  NSQ10_RS16620 (NSQ10_16620) - 3206559..3207227 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53189.14 Da        Isoelectric Point: 10.0483

>NTDB_id=965938 NSQ10_RS16600 WP_339208369.1 3201831..3203228(-) (comFA) [Bacillus sp. FSL R5-0432]
MNMDKAMELMRQLHSRHLLTAETRCPQYKLDWLEEKGLVNRTPAIERKANGFTCCRCGVSHKRYFAHSPCEVCQKDCVYC
RSCIMMGKATECGFLYEWTGPQKVETYRAELTWQGELSKGQKRASEKMIEAIKSKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMSVCIATPRTDVVLELEPRLRKAFQGMTIAVLYGGSSQRFQIAPLVIATTHQLMRYKNAFDVVIVDEVDAFPYSMDE
RLQFAVLKAMRKNGGVRIYLSATPSKKMTRKVSSGKLEAIKIPLRFHKQPLPVPTFHWIGHWKKKLKKNQLPRKVMNWMQ
RHIENKRRVLLFVPSIATMKKVTKILREHSLNVEGVSADDPDRKQKVQHFRDYVYDVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKKHIVKMNDTAANEFSEKQCGFN

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=965938 NSQ10_RS16600 WP_339208369.1 3201831..3203228(-) (comFA) [Bacillus sp. FSL R5-0432]
TTGAATATGGACAAAGCAATGGAACTAATGCGGCAGCTGCATTCACGCCATTTGCTCACCGCCGAAACAAGGTGCCCACA
GTACAAATTGGATTGGCTGGAGGAGAAGGGCTTAGTCAATCGAACACCTGCCATTGAGAGGAAAGCAAATGGTTTTACAT
GCTGCCGATGCGGTGTATCACACAAGCGGTACTTTGCTCACTCTCCATGTGAAGTGTGTCAAAAGGATTGTGTGTACTGT
AGGTCATGCATCATGATGGGAAAAGCAACTGAATGTGGGTTTCTTTATGAATGGACAGGTCCACAAAAAGTAGAAACATA
TCGAGCTGAATTAACATGGCAGGGAGAGCTGTCTAAAGGACAAAAAAGAGCGTCAGAAAAAATGATTGAAGCTATCAAAA
GCAAATTTGATCTGCTTGTTTGGGCGGTTTGCGGGGCAGGGAAAACGGAGGTGCTTTTTCACGGAATCGAATATGCGTTA
AATCAAGGAATGAGTGTCTGTATTGCGACCCCTAGAACAGATGTTGTGCTTGAACTCGAACCACGACTTAGAAAAGCATT
TCAGGGGATGACAATAGCCGTACTTTATGGAGGCAGTTCTCAAAGGTTTCAGATTGCACCGCTAGTGATCGCCACAACCC
ATCAGCTGATGAGGTACAAAAATGCATTTGATGTGGTCATTGTAGATGAAGTCGATGCCTTTCCTTATTCAATGGATGAA
CGTCTCCAATTTGCTGTTCTAAAGGCGATGAGAAAGAACGGAGGGGTTAGGATTTATTTAAGTGCGACACCCTCTAAAAA
AATGACGAGAAAGGTTTCTAGTGGAAAACTGGAAGCGATAAAAATTCCTCTGCGTTTTCATAAACAACCATTACCCGTAC
CAACCTTTCATTGGATTGGACATTGGAAAAAGAAATTAAAAAAGAATCAGCTGCCCCGTAAAGTGATGAATTGGATGCAG
AGACATATTGAAAATAAAAGAAGAGTATTACTTTTTGTTCCTTCAATTGCTACCATGAAGAAGGTAACGAAGATTCTTCG
AGAACACTCCTTAAACGTGGAGGGAGTATCTGCCGATGATCCAGATAGGAAACAAAAGGTTCAGCACTTTAGAGATTACG
TATACGATGTACTAGTTACAACCACTATTCTAGAAAGAGGCGTAACCATTCCAAATGTTCAAGTGGGGGTATTAGGTTCG
GAATCTACTATTTTTACAGAGAGTGCACTTGTTCAGATTTCTGGAAGAGTAGGCAGACACCCGGATTATTGTACAGGAGA
CGTTTTCCTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGTTAAAATGAATGATACGGCTG
CAAATGAGTTCTCTGAAAAACAGTGTGGGTTCAACTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-265)

Helicase conserved C-terminal domain (Helicase_C)

(322-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.308

97.849

0.512

Multiple sequence alignment