Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NST56_RS18945 Genome accession   NZ_CP150195
Coordinates   3610662..3611351 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. FSL R5-0560     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3605662..3616351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST56_RS18910 (NST56_18910) flgN 3605843..3606325 (-) 483 WP_339178446.1 flagellar protein FlgN -
  NST56_RS18915 (NST56_18915) flgM 3606340..3606606 (-) 267 WP_010332065.1 flagellar biosynthesis anti-sigma factor FlgM -
  NST56_RS18920 (NST56_18920) - 3606687..3607106 (-) 420 WP_198098075.1 TIGR03826 family flagellar region protein -
  NST56_RS18925 (NST56_18925) comFC 3607180..3607902 (-) 723 WP_339178451.1 double zinc ribbon domain-containing protein Machinery gene
  NST56_RS18930 (NST56_18930) - 3607866..3608162 (-) 297 WP_229149470.1 late competence development ComFB family protein -
  NST56_RS18935 (NST56_18935) comFA 3608219..3609613 (-) 1395 WP_339178454.1 ATP-dependent helicase ComFA Machinery gene
  NST56_RS18940 (NST56_18940) - 3609720..3610565 (-) 846 WP_286059607.1 DegV family protein -
  NST56_RS18945 (NST56_18945) degU 3610662..3611351 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NST56_RS18950 (NST56_18950) degS 3611434..3612591 (-) 1158 WP_010332072.1 two-component sensor histidine kinase DegS Regulator
  NST56_RS18955 (NST56_18955) - 3612808..3613461 (+) 654 WP_010332073.1 YigZ family protein -
  NST56_RS18960 (NST56_18960) - 3613461..3614627 (+) 1167 WP_339178461.1 LCP family protein -
  NST56_RS18965 (NST56_18965) - 3614703..3615779 (-) 1077 WP_010332075.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=965877 NST56_RS18945 WP_003219701.1 3610662..3611351(-) (degU) [Bacillus sp. FSL R5-0560]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=965877 NST56_RS18945 WP_003219701.1 3610662..3611351(-) (degU) [Bacillus sp. FSL R5-0560]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTGAAGCGGATATTGGATTTCGAACC
TACCTTTGAAGTGGTAGCGGAAGGAGACGACGGAGATGAAGCGGCTCGTATCGTTGAGCACTATCATCCTGATGTCGTGA
TCATGGATATCAATATGCCGAACGTAAATGGCGTGGAAGCTACAAAGCAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCGATTCACGATGACGAGAATTATGTAACACATGCCCTGAAAACAGGTGCAAGGGGTTATCTGCTGAAAGA
GATGGATGCTGATACACTGATTGAAGCGGTTAAAGTAGTTGCCGAGGGCGGTTCTTACCTTCACCCGAAGGTTACTCACA
ACCTCGTAAACGAATTCCGCCGTCTTGCAACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTCTATCCAGAGATTCGC
AGACCATTACATATTTTAACAAGGCGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAAAAAACTGTTAAAAACCATGTCAGCAATATCTTACAAAAAATGAATGTAAACGACCGGA
CGCAGGCCGTGGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment