Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NST56_RS18935 Genome accession   NZ_CP150195
Coordinates   3608219..3609613 (-) Length   464 a.a.
NCBI ID   WP_339178454.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0560     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3603219..3614613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST56_RS18900 (NST56_18900) flgL 3603395..3604291 (-) 897 WP_010332062.1 flagellar hook-associated protein FlgL -
  NST56_RS18905 (NST56_18905) flgK 3604301..3605824 (-) 1524 WP_339178443.1 flagellar hook-associated protein FlgK -
  NST56_RS18910 (NST56_18910) flgN 3605843..3606325 (-) 483 WP_339178446.1 flagellar protein FlgN -
  NST56_RS18915 (NST56_18915) flgM 3606340..3606606 (-) 267 WP_010332065.1 flagellar biosynthesis anti-sigma factor FlgM -
  NST56_RS18920 (NST56_18920) - 3606687..3607106 (-) 420 WP_198098075.1 TIGR03826 family flagellar region protein -
  NST56_RS18925 (NST56_18925) comFC 3607180..3607902 (-) 723 WP_339178451.1 double zinc ribbon domain-containing protein Machinery gene
  NST56_RS18930 (NST56_18930) - 3607866..3608162 (-) 297 WP_229149470.1 late competence development ComFB family protein -
  NST56_RS18935 (NST56_18935) comFA 3608219..3609613 (-) 1395 WP_339178454.1 ATP-dependent helicase ComFA Machinery gene
  NST56_RS18940 (NST56_18940) - 3609720..3610565 (-) 846 WP_286059607.1 DegV family protein -
  NST56_RS18945 (NST56_18945) degU 3610662..3611351 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NST56_RS18950 (NST56_18950) degS 3611434..3612591 (-) 1158 WP_010332072.1 two-component sensor histidine kinase DegS Regulator
  NST56_RS18955 (NST56_18955) - 3612808..3613461 (+) 654 WP_010332073.1 YigZ family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52979.04 Da        Isoelectric Point: 9.9475

>NTDB_id=965876 NST56_RS18935 WP_339178454.1 3608219..3609613(-) (comFA) [Bacillus sp. FSL R5-0560]
MQTKTSESNSLFSKELQQQFQSRHLLRTEISFSDEIIDWHTEHGYISAEESLSKNKRGYRCNRCGQNDQQYFSSYHSFGK
DKVYCRSCVMMGRVSEDISLYSWSKEAEANWKPIKLTWDGKLSSGQQKAADVLIEAISKQEELLIWAVCGAGKTELLFPG
IELALNLKQRVCIATPRTDVVLELAPRLKAAFRGADISALYGGSDDKGRLSPLIISTTHQLLRYKDAFDVMIVDEVDAFP
YSADQTLQFAVQKARKKNSTLVYLSATPPKELKRKTYKGELKSVRIPARYHRKPLPEPRFQWCGNWKKKLIRNKIPNAVK
RWIEQHVKEGRPVFLFVPSISILEKAASCFKNMNYRTASVHAEDKLRKEKVQQFRDGQFDLLITTTILERGVTVPMVQTG
ILGAESPIFTESALVQIAGRTGRHKEHADGDVIYFHFGKTKSMIEARKHIKIMNELALKNKLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=965876 NST56_RS18935 WP_339178454.1 3608219..3609613(-) (comFA) [Bacillus sp. FSL R5-0560]
ATGCAGACTAAGACATCAGAATCGAACAGTCTATTCTCTAAAGAACTGCAGCAGCAGTTCCAGAGCCGTCATCTGCTTAG
AACAGAAATCTCATTTTCTGACGAGATCATTGATTGGCATACCGAGCATGGTTATATATCTGCCGAGGAGTCATTATCAA
AAAATAAACGGGGATATAGATGCAATAGATGCGGTCAAAATGATCAACAGTATTTTTCATCGTATCATTCATTTGGAAAA
GATAAGGTTTACTGCCGCTCTTGTGTCATGATGGGCAGGGTGAGTGAGGATATTTCTTTATATTCTTGGAGTAAGGAGGC
GGAGGCAAACTGGAAGCCTATAAAACTGACTTGGGATGGAAAGCTTTCAAGCGGACAGCAAAAGGCCGCTGACGTCTTAA
TTGAAGCAATTTCGAAGCAAGAAGAGCTCCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACTGAATTATTATTCCCGGGT
ATAGAATTGGCATTAAATCTAAAACAGCGTGTTTGTATTGCGACCCCGCGCACCGATGTTGTATTAGAGCTTGCTCCGAG
GCTGAAGGCTGCATTTCGAGGTGCTGATATTTCAGCTTTATACGGAGGAAGTGATGACAAAGGGCGTTTATCTCCGCTTA
TAATTTCCACAACCCATCAGCTTTTGCGTTATAAAGACGCATTCGACGTCATGATCGTTGATGAAGTGGATGCTTTTCCA
TATTCCGCTGATCAAACCCTTCAATTCGCTGTCCAAAAAGCGAGAAAGAAAAACAGCACTCTTGTTTATCTAAGTGCCAC
ACCTCCTAAAGAATTAAAAAGAAAAACGTATAAAGGTGAGTTGAAGTCCGTTCGCATACCGGCCAGATACCATCGGAAAC
CGTTGCCTGAACCGCGCTTTCAATGGTGCGGAAACTGGAAAAAGAAATTAATCCGAAATAAGATCCCAAATGCGGTAAAA
AGATGGATAGAGCAGCATGTAAAAGAAGGAAGGCCCGTTTTTTTATTTGTTCCTTCCATTTCTATACTGGAAAAGGCTGC
TTCTTGTTTTAAAAATATGAATTATCGAACAGCGTCTGTACATGCGGAAGACAAGCTCAGAAAAGAAAAAGTGCAGCAAT
TTCGAGACGGTCAGTTTGATCTGTTAATCACAACAACAATATTAGAAAGAGGTGTCACAGTTCCTATGGTCCAAACAGGC
ATCTTAGGGGCAGAATCGCCCATCTTTACGGAAAGCGCGCTTGTGCAAATCGCGGGAAGGACAGGCCGGCATAAAGAACA
TGCAGACGGTGATGTCATTTATTTTCACTTCGGAAAAACAAAGAGTATGATAGAGGCAAGAAAACATATCAAAATAATGA
ATGAATTGGCTTTGAAAAATAAGTTGATAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(121-269)

Helicase conserved C-terminal domain (Helicase_C)

(323-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

84.498

98.707

0.834

Multiple sequence alignment