Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NST56_RS16950 Genome accession   NZ_CP150195
Coordinates   3206630..3207274 (-) Length   214 a.a.
NCBI ID   WP_010331690.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0560     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3201630..3212274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST56_RS16915 (NST56_16915) - 3202823..3203254 (+) 432 WP_024122673.1 Na(+)/H(+) antiporter subunit B -
  NST56_RS16920 (NST56_16920) - 3203254..3203595 (+) 342 WP_010331684.1 Na(+)/H(+) antiporter subunit C -
  NST56_RS16925 (NST56_16925) - 3203588..3205069 (+) 1482 WP_326334359.1 Na+/H+ antiporter subunit D -
  NST56_RS16930 (NST56_16930) - 3205075..3205551 (+) 477 WP_010331686.1 Na+/H+ antiporter subunit E -
  NST56_RS16935 (NST56_16935) - 3205551..3205835 (+) 285 WP_024122677.1 Na(+)/H(+) antiporter subunit F1 -
  NST56_RS16940 (NST56_16940) mnhG 3205819..3206193 (+) 375 WP_010331688.1 monovalent cation/H(+) antiporter subunit G -
  NST56_RS16945 (NST56_16945) - 3206232..3206612 (-) 381 WP_339177933.1 hotdog fold thioesterase -
  NST56_RS16950 (NST56_16950) comA 3206630..3207274 (-) 645 WP_010331690.1 two-component system response regulator ComA Regulator
  NST56_RS16955 (NST56_16955) comP 3207355..3209655 (-) 2301 WP_339177936.1 histidine kinase Regulator
  NST56_RS16960 (NST56_16960) comX 3209667..3209831 (-) 165 WP_268471515.1 competence pheromone ComX -
  NST56_RS16965 (NST56_16965) - 3209844..3210704 (-) 861 WP_268471516.1 polyprenyl synthetase family protein -
  NST56_RS16970 (NST56_16970) degQ 3210889..3211029 (-) 141 WP_010331694.1 degradation enzyme regulation protein DegQ Regulator
  NST56_RS16975 (NST56_16975) - 3211490..3211858 (+) 369 WP_010331695.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24142.49 Da        Isoelectric Point: 4.6801

>NTDB_id=965870 NST56_RS16950 WP_010331690.1 3206630..3207274(-) (comA) [Bacillus sp. FSL R5-0560]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIRQHDFSSYDLILMDLNLGGDVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=965870 NST56_RS16950 WP_010331690.1 3206630..3207274(-) (comA) [Bacillus sp. FSL R5-0560]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCCAGCGAACAGTTCATACGCCAGCATGATTTCTCATCATATGATCTCATTTTAA
TGGATTTGAACTTAGGCGGCGATGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTATATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGCGCCATCAGCAAAAC
CGAATCAAAGGAAAAGATCACCCAATACATATATCACGTGCTCAACGGAGAAATTTTAGTCGATTTCGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCCCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCAAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGTTTTACCAACCAAGAAATTGCAGATGCGCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCCTGACGTCGATTTTCAACAAGCTTAATGTCGGTTCCCGGACGGAAGCGGTGTTGATTGCAAAATCAGACGGTGTGC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

99.065

100

0.991

Multiple sequence alignment