Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AABJ90_RS04230 Genome accession   NZ_AP028964
Coordinates   839476..840111 (+) Length   211 a.a.
NCBI ID   WP_003243201.1    Uniprot ID   O32197
Organism   Bacillus subtilis strain NA05 = NBRC 116153     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 834476..845111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ90_RS04205 (BsubNA05_08220) liaI 835613..835993 (+) 381 WP_014480835.1 cell envelope stress-induced membrane anchor protein LiaI -
  AABJ90_RS04210 (BsubNA05_08230) liaH 836020..836697 (+) 678 WP_003228506.1 PspA/IM30 family protein -
  AABJ90_RS04215 liaG 836799..837660 (+) 862 Protein_836 DUF4097 domain-containing protein -
  AABJ90_RS04220 (BsubNA05_08260) liaF 837694..838419 (+) 726 WP_003242605.1 LiaRS two-component regulatory system accessory protein LiaF -
  AABJ90_RS04225 (BsubNA05_08270) liaS 838416..839498 (+) 1083 WP_003244464.1 two-component system sensor histidine kinase LiaS -
  AABJ90_RS04230 (BsubNA05_08280) vraR 839476..840111 (+) 636 WP_003243201.1 two-component system response regulator LiaR Regulator
  AABJ90_RS04235 (BsubNA05_08290) gerAC 840119..841240 (-) 1122 WP_003243203.1 spore germination receptor protein GerAC -
  AABJ90_RS04240 (BsubNA05_08300) gerAB 841237..842334 (-) 1098 WP_009968145.1 spore germination receptor protein GerAB -
  AABJ90_RS04245 (BsubNA05_08310) gerAA 842303..843751 (-) 1449 WP_119899752.1 spore germination receptor protein GerAA -
  AABJ90_RS04250 (BsubNA05_08320) yvzF 843869..844054 (+) 186 WP_003228521.1 YvzF family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23124.76 Da        Isoelectric Point: 4.9049

>NTDB_id=96587 AABJ90_RS04230 WP_003243201.1 839476..840111(+) (vraR) [Bacillus subtilis strain NA05 = NBRC 116153]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAVELSPDVILMDLVMEGMDGIEATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=96587 AABJ90_RS04230 WP_003243201.1 839476..840111(+) (vraR) [Bacillus subtilis strain NA05 = NBRC 116153]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTTGCTGTGGAACTGTCGCCTGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTGAAGCTACAAAGCAAATTTGCCGGGAGCTTTCCGACCCGAAAATTATTGTG
CTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGCGCTCCCGCATGAATCGCTTACAAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACGAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCACACCGAAATCATCTCGTGAATTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O32197

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.857

99.526

0.526
  degU Bacillus subtilis subsp. subtilis str. 168

38.565

100

0.408

Multiple sequence alignment