Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   NST56_RS15065 Genome accession   NZ_CP150195
Coordinates   2832873..2833619 (-) Length   248 a.a.
NCBI ID   WP_339177506.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0560     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2827873..2838619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST56_RS15040 (NST56_15040) mreC 2828282..2829154 (-) 873 WP_010335163.1 rod shape-determining protein MreC -
  NST56_RS15045 (NST56_15045) mreB 2829185..2830198 (-) 1014 WP_010335164.1 cell shape-determining protein MreB -
  NST56_RS15050 (NST56_15050) radC 2830290..2830985 (-) 696 WP_168748368.1 DNA repair protein RadC -
  NST56_RS15055 (NST56_15055) - 2831022..2831591 (-) 570 WP_010335166.1 Maf family nucleotide pyrophosphatase -
  NST56_RS15060 (NST56_15060) - 2831742..2832740 (-) 999 WP_010335167.1 SPOR domain-containing protein -
  NST56_RS15065 (NST56_15065) comC 2832873..2833619 (-) 747 WP_339177506.1 A24 family peptidase Machinery gene
  NST56_RS15070 (NST56_15070) - 2833760..2835052 (-) 1293 WP_339177507.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NST56_RS15075 (NST56_15075) valS 2835112..2837754 (-) 2643 WP_010335170.1 valine--tRNA ligase -
  NST56_RS15080 (NST56_15080) - 2838202..2838393 (+) 192 WP_010335171.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26617.32 Da        Isoelectric Point: 9.7311

>NTDB_id=965865 NST56_RS15065 WP_339177506.1 2832873..2833619(-) (comC) [Bacillus sp. FSL R5-0560]
MIPILFVLGLILGSFYYTAGCRIPLHMSIINPRSACSFCRRSLTPAELIPVLSFALLKGKCKSCGQKLSLMYPAAELSTA
CLFAAAGFRFGLSWELIVALLFLSLLIIVSVTDIHFMLIPNRILLFFLPFLAAGRIISPLYSWYEGFIGAAAGFLLLSFI
AVITHGGIGGGDIKLLAVIGLVLGVKMLAIAFFFSVLIGALYGTAAILFGRLGRKQPIPFAPAIAAGSIFAYLYGDSIIS
FYVKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=965865 NST56_RS15065 WP_339177506.1 2832873..2833619(-) (comC) [Bacillus sp. FSL R5-0560]
ATGATTCCGATTCTTTTTGTCCTCGGCCTTATCCTCGGTTCATTTTATTACACGGCAGGATGCCGTATCCCCTTACACAT
GTCCATCATAAACCCGCGTTCGGCATGTTCTTTTTGCCGGAGAAGCTTAACCCCGGCAGAATTAATCCCTGTTTTATCTT
TTGCTCTGCTAAAAGGCAAATGCAAAAGCTGCGGCCAAAAGCTCTCTCTTATGTATCCAGCGGCAGAGCTCTCGACAGCG
TGTTTATTTGCAGCCGCGGGATTTCGTTTTGGTTTGTCTTGGGAACTGATTGTTGCGTTGCTGTTTCTGTCTCTTCTTAT
CATTGTTTCTGTGACAGATATTCACTTTATGTTGATTCCAAATCGCATATTGCTATTCTTTCTTCCCTTTCTGGCGGCTG
GCAGAATCATTTCTCCGCTTTATTCATGGTATGAAGGCTTCATAGGTGCGGCTGCCGGTTTTCTTTTGCTGTCCTTTATT
GCCGTCATCACTCATGGAGGAATAGGGGGAGGGGATATTAAATTACTTGCCGTCATCGGACTTGTGCTTGGTGTGAAAAT
GCTTGCTATCGCGTTTTTCTTTTCCGTACTTATAGGAGCATTGTACGGAACTGCCGCTATACTGTTCGGAAGGCTGGGCA
GAAAACAGCCGATTCCCTTTGCACCGGCAATTGCGGCAGGAAGCATTTTCGCTTATTTATACGGTGACTCTATCATTTCC
TTTTATGTCAAAATGGCGTTAGGGTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-89)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

79.435

100

0.794

Multiple sequence alignment