Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NST56_RS13475 Genome accession   NZ_CP150195
Coordinates   2549023..2550753 (-) Length   576 a.a.
NCBI ID   WP_339177104.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0560     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2544023..2555753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST56_RS13455 (NST56_13455) - 2544415..2544549 (+) 135 WP_168748207.1 hypothetical protein -
  NST56_RS13460 (NST56_13460) - 2544622..2545740 (+) 1119 WP_339177100.1 NADH-dependent flavin oxidoreductase -
  NST56_RS13465 (NST56_13465) spo0A 2546307..2547110 (-) 804 WP_168748210.1 sporulation transcription factor Spo0A Regulator
  NST56_RS13470 (NST56_13470) spoIVB 2547386..2548663 (-) 1278 WP_268505001.1 SpoIVB peptidase -
  NST56_RS13475 (NST56_13475) recN 2549023..2550753 (-) 1731 WP_339177104.1 DNA repair protein RecN Machinery gene
  NST56_RS13480 (NST56_13480) argR 2550789..2551238 (-) 450 WP_010334883.1 arginine repressor ArgR -
  NST56_RS13485 (NST56_13485) - 2551335..2552180 (-) 846 WP_339177108.1 TlyA family RNA methyltransferase -
  NST56_RS13490 (NST56_13490) dxs 2552177..2554078 (-) 1902 WP_010334885.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NST56_RS13495 (NST56_13495) - 2554257..2555147 (-) 891 WP_010334886.1 polyprenyl synthetase family protein -
  NST56_RS13500 (NST56_13500) - 2555137..2555391 (-) 255 WP_010334887.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64615.31 Da        Isoelectric Point: 4.6801

>NTDB_id=965847 NST56_RS13475 WP_339177104.1 2549023..2550753(-) (recN) [Bacillus sp. FSL R5-0560]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGETKAELEGLFQLDSGHPVFDVC
AEQGIDVSDEMIVMRRDISTNGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALQ
AYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIFESLQNAYNALRSE
QGGLDWVGMASSQLEDLSDINEPLQKLSESVSNSYYLLEDATFQMRNMLDELEYDPERLNFIEARLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKQELDSVGKDVAVEAANVSRIRKSWAKKLAEEIHRELKSLYMEKSTFDTEFKV
RTATRGEEAPVVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSMGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLTKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=965847 NST56_RS13475 WP_339177104.1 2549023..2550753(-) (recN) [Bacillus sp. FSL R5-0560]
TTGTTAGCTGAATTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGATGCCATTTCACTTTTAGTCGGTGGCCGCGGCTCATCTGAAT
TTGTCAGGTATGGAGAAACAAAAGCCGAGCTTGAAGGGCTGTTTCAGTTAGACAGCGGCCATCCCGTTTTTGACGTTTGT
GCTGAACAGGGGATTGACGTTTCAGATGAAATGATCGTCATGAGAAGGGATATCAGCACGAACGGAAAAAGCGTATGCCG
GGTAAATGGCAAACTTGTAACGATTGCGTCGCTAAGAGAAATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAGGACGAAAATCATCTTCAGCTATTGGACAAGTTTGCGGGAGCCGAAGTGGAAAGCGCACTTCAA
GCATATCAGGAAGGTTATCAGCGCTACATGAAGCTGCTTAAAAAGTTGAAGCAGCTTTCTGAAAGTGAGCAGGAAATGGC
GCACCGGCTTGATCTGATTCAATTTCAGCTGGAAGAAATTGAATCAGCAAAACTCGAACTGAACGAAGATGAGCAGTTGC
AAGAAGAGCGTCAGCAAATTTCAAATTTTGAGAAAATATTTGAATCACTGCAAAATGCTTATAATGCGCTGCGCAGCGAG
CAGGGCGGTCTGGACTGGGTCGGAATGGCGTCGTCTCAGCTTGAAGATTTATCCGATATTAACGAACCGCTGCAAAAACT
GTCTGAGAGTGTTTCGAACTCCTACTATCTTTTGGAGGACGCTACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
ATGACCCGGAACGATTGAATTTTATTGAGGCGCGTCTTAATGAGATTAAGCAGCTAAAGCGGAAATACGGGGCAACAGTT
GAGGATATTTTAGAATATGCTTCTAAAATTGAAGAAGAGATTGATCAAATTGAAAACAGAGACAGCCATCTTCAGAGCCT
GAAGCAGGAGCTCGATTCGGTTGGTAAAGATGTTGCAGTAGAAGCGGCAAACGTTTCCCGAATCCGAAAATCATGGGCGA
AAAAGCTGGCTGAGGAAATCCATCGTGAACTGAAAAGCTTATATATGGAAAAGTCGACTTTTGATACGGAGTTTAAGGTT
AGAACAGCAACCCGCGGTGAGGAAGCGCCGGTTGTAAACGGGCAGCCTGTTCAGCTCACTGAACAAGGGATTGATCTGGT
GAAGTTTTTGATTTCTACCAATACGGGGGAGCCGCTGAAATCTCTTTCTAAAGTTGCTTCCGGTGGAGAGCTGTCAAGGG
TCATGCTTGCCATTAAAAGCATTTTCTCCTCACAGCAGGACGTTACCTCGATTATATTTGACGAGGTAGATACAGGCGTA
AGCGGCAGGGTCGCTCAGGCTATTGCTGAAAAGATTCACAAAGTATCAATGGGATCACAAGTGCTTTGCATTACGCACCT
GCCTCAGGTGGCAGCCATGGCCGATACCCATCTTTACATTGCGAAAGAATTAAAAGACGGAAGAACGACGACGCGTGTAA
AGCCGCTGACTAAACAAGAGAAGGTGGCGGAAATCGGGCGCATGATAGCAGGAGTCGAAGTCACAGACTTAACAAAACGC
CATGCGAAAGAGCTGTTAAAACAAGCGGATCAAGTCAAAACAACTGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

95.486

100

0.955

Multiple sequence alignment