Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   NST56_RS13465 Genome accession   NZ_CP150195
Coordinates   2546307..2547110 (-) Length   267 a.a.
NCBI ID   WP_168748210.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0560     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2541307..2552110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST56_RS13440 (NST56_13440) - 2542318..2543061 (-) 744 WP_168748205.1 glycerophosphodiester phosphodiesterase -
  NST56_RS13445 (NST56_13445) - 2543151..2543771 (-) 621 WP_268449550.1 N-acetylmuramoyl-L-alanine amidase -
  NST56_RS13450 (NST56_13450) - 2543794..2544087 (-) 294 WP_339177096.1 hypothetical protein -
  NST56_RS13455 (NST56_13455) - 2544415..2544549 (+) 135 WP_168748207.1 hypothetical protein -
  NST56_RS13460 (NST56_13460) - 2544622..2545740 (+) 1119 WP_339177100.1 NADH-dependent flavin oxidoreductase -
  NST56_RS13465 (NST56_13465) spo0A 2546307..2547110 (-) 804 WP_168748210.1 sporulation transcription factor Spo0A Regulator
  NST56_RS13470 (NST56_13470) spoIVB 2547386..2548663 (-) 1278 WP_268505001.1 SpoIVB peptidase -
  NST56_RS13475 (NST56_13475) recN 2549023..2550753 (-) 1731 WP_339177104.1 DNA repair protein RecN Machinery gene
  NST56_RS13480 (NST56_13480) argR 2550789..2551238 (-) 450 WP_010334883.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29733.23 Da        Isoelectric Point: 6.3917

>NTDB_id=965846 NST56_RS13465 WP_168748210.1 2546307..2547110(-) (spo0A) [Bacillus sp. FSL R5-0560]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESELKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKRKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=965846 NST56_RS13465 WP_168748210.1 2546307..2547110(-) (spo0A) [Bacillus sp. FSL R5-0560]
GTGGAGAAAATTAAAGTTTGTGTTGCTGACGATAATCGAGAGCTGGTAAGCCTGTTGAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTCATCGGAGTTGCTTATAACGGACAGGAATGTCTGTCGCTATTTAAAGAAAAAGATCCTGATGTGCTCG
TCTTGGACATTATTATGCCGCATTTGGACGGACTTGCTGTTTTAGAGCGACTGAGAGAATCAGAGCTGAAAAAACAGCCA
AACGTCATCATGCTGACAGCCTTCGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTGGGAGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATTCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGCGCGC
CGTCATCACAAAGCAGCATTATACGCAGCAGCCAGCCTGAACCAAAAAGGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCTGCACATATTAAAGGCTATCTCTATCTGCGTGAAGCGATCTCAATGGTGTATAACGACAT
CGAACTGCTCGGCAGTATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAATACAACCGCTAGCCGTGTAGAGA
GAGCGATCCGCCACGCAATTGAAGTGGCATGGAGCAGAGGGAATATTGATTCCATATCCTCATTGTTCGGTTATACAGTC
AGCATGACGAAGGCAAAACCTACAAATTCAGAGTTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

99.251

100

0.993

Multiple sequence alignment