Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NST29_RS13665 Genome accession   NZ_CP150194
Coordinates   2720109..2721929 (-) Length   606 a.a.
NCBI ID   WP_033843311.1    Uniprot ID   -
Organism   Geobacillus sp. FSL W8-0026     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2715109..2726929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST29_RS13630 (NST29_13630) - 2715333..2715971 (-) 639 WP_033018860.1 GTP pyrophosphokinase family protein -
  NST29_RS13635 (NST29_13635) - 2716336..2716725 (-) 390 WP_033843316.1 hypothetical protein -
  NST29_RS13640 (NST29_13640) - 2716862..2717452 (+) 591 WP_033843315.1 CYTH domain-containing protein -
  NST29_RS13645 (NST29_13645) - 2717449..2718045 (+) 597 WP_033843314.1 lytic transglycosylase domain-containing protein -
  NST29_RS13650 (NST29_13650) - 2718144..2718557 (+) 414 WP_033018842.1 globin -
  NST29_RS13655 (NST29_13655) spxH 2718550..2719440 (+) 891 WP_033843313.1 ClpXP adapter protein SpxH -
  NST29_RS13660 (NST29_13660) - 2719900..2720097 (+) 198 WP_033843312.1 hypothetical protein -
  NST29_RS13665 (NST29_13665) pepF 2720109..2721929 (-) 1821 WP_033843311.1 oligoendopeptidase F Regulator
  NST29_RS13670 (NST29_13670) - 2721967..2723256 (-) 1290 WP_033844813.1 competence protein CoiA family protein -
  NST29_RS13675 (NST29_13675) cls 2723678..2725186 (-) 1509 WP_033843310.1 cardiolipin synthase -
  NST29_RS13680 (NST29_13680) mecA 2725313..2725993 (-) 681 WP_033018849.1 adaptor protein MecA -
  NST29_RS13685 (NST29_13685) - 2726202..2726861 (+) 660 WP_033843309.1 TerC family protein -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 70220.11 Da        Isoelectric Point: 5.0351

>NTDB_id=965788 NST29_RS13665 WP_033843311.1 2720109..2721929(-) (pepF) [Geobacillus sp. FSL W8-0026]
MVEEKKTKKSLPSRSEIPIEETWRLEDIFPTDEAWEQEFRQVKAMIPKLGEYKGRLGESPELLYEALQYQDEVSMRLGKL
YTYAHMRYDQDTTNSFYQGLDARAKSLYSEASSAMAFIVPEILAIDEATLRAFLEQYEPLRLYAHALDEITRQRPHVLSA
EEEALLAQAAEVMQSASNTFSALNNADLTFPAIVDENGEEVEVTHGRFIRFLESADRRVRRDAFYAVYQTYDQFQHTFAN
TLAGAVKKDNFFARVRRYESARQAALDANNIPESVYDNLIATIHEHLPLLHRYVRLRKRALGLDELHMYDLYTPLVKEVK
MEVTYDEAKQYMLEGLAPLGEEYIAIVKEGLENRWVDVRENRGKRSGAYSSGAYGTHPYILLNWQDNVNNLFTLVHEFGH
SVHSYYTRRTQPYPYAHYSIFVAEVASTCNEALLNDYLLKTIDDDKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHLKE
QQGEALTAETLTSLYYDLNQKYFGSDMVVDKEIGLEWARIPHFYYNYYVYQYATGFSAATALSRQILEEGEPAVKRYIDF
LKAGSSDYPIEVLKKAGVDMTSAEPIRQACQVFAEKLEEFERLLGN

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=965788 NST29_RS13665 WP_033843311.1 2720109..2721929(-) (pepF) [Geobacillus sp. FSL W8-0026]
ATGGTGGAGGAAAAAAAGACAAAGAAGTCGCTGCCGTCGCGCAGCGAGATTCCGATTGAAGAGACATGGAGGCTAGAAGA
CATTTTTCCAACTGATGAGGCGTGGGAGCAGGAGTTCCGTCAAGTGAAAGCCATGATCCCGAAGCTCGGGGAGTACAAAG
GGCGGCTTGGCGAATCGCCGGAACTGCTGTATGAGGCGCTGCAATATCAAGACGAAGTATCGATGCGGCTTGGCAAGCTG
TATACATACGCCCATATGCGCTATGATCAAGACACAACCAACTCCTTTTACCAAGGGCTTGACGCTCGGGCGAAAAGTTT
ATACAGCGAAGCGTCCAGCGCGATGGCGTTCATCGTTCCGGAAATTTTGGCCATCGATGAGGCGACGTTGCGCGCCTTTT
TGGAACAGTACGAGCCGCTTCGATTGTATGCTCATGCCTTGGATGAGATTACGCGCCAACGCCCGCACGTTCTCTCGGCT
GAGGAGGAGGCGCTGTTGGCGCAGGCGGCCGAGGTGATGCAGTCAGCGTCCAACACGTTCAGCGCGTTGAATAACGCCGA
TTTGACCTTTCCGGCCATCGTCGATGAAAACGGTGAGGAAGTGGAAGTCACGCACGGGCGTTTCATCCGCTTTTTGGAAA
GCGCGGATCGCCGTGTTCGCCGCGATGCGTTTTACGCGGTGTACCAGACGTACGATCAATTCCAACACACCTTTGCCAAT
ACGTTAGCCGGCGCGGTGAAAAAGGATAACTTTTTTGCTCGCGTCCGCCGCTATGAATCCGCCCGGCAGGCCGCGTTGGA
TGCGAACAACATTCCTGAGAGCGTATATGACAACTTGATCGCTACCATCCACGAGCATTTGCCGCTGCTGCATCGCTACG
TGCGGCTGCGCAAACGAGCGCTCGGGCTCGATGAGCTGCACATGTACGACTTATATACGCCGCTAGTCAAAGAGGTAAAA
ATGGAAGTGACGTATGACGAAGCGAAGCAGTATATGCTGGAAGGGTTGGCGCCGCTCGGGGAGGAATACATCGCCATTGT
CAAAGAAGGACTTGAGAATCGCTGGGTTGATGTCCGCGAAAACCGAGGAAAGCGGAGCGGGGCCTATTCCTCGGGAGCGT
ACGGCACACACCCGTACATTTTGCTCAACTGGCAGGACAACGTCAACAATTTGTTTACGCTCGTTCATGAGTTCGGCCAT
TCGGTTCACAGCTACTACACACGCCGAACGCAGCCGTATCCATACGCCCATTATTCGATTTTTGTCGCCGAAGTGGCGTC
GACGTGCAACGAAGCGCTGTTGAATGATTATTTATTGAAAACGATCGATGATGACAAAAAGCGGCTGTATTTGCTCAACC
ATTACCTTGAAGGATTCCGCGGCACCGTCTTTCGGCAGACGATGTTCGCCGAGTTTGAGCATTTGATCCATTTGAAGGAG
CAGCAAGGGGAGGCGCTGACGGCAGAGACGCTGACATCGCTGTACTATGACTTGAATCAAAAGTACTTCGGCAGCGACAT
GGTGGTCGACAAAGAAATCGGCTTGGAATGGGCGCGCATTCCGCATTTTTATTACAACTACTACGTGTATCAATATGCGA
CTGGTTTCAGCGCGGCGACGGCGCTTAGCCGGCAAATTCTTGAAGAGGGTGAACCGGCGGTGAAGCGGTACATCGACTTT
TTAAAAGCGGGCAGCTCCGATTATCCGATTGAAGTGCTGAAAAAAGCCGGGGTGGATATGACGAGCGCCGAGCCGATCCG
CCAAGCGTGCCAAGTGTTCGCCGAAAAACTGGAAGAATTCGAGCGGCTGCTTGGGAACTGA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(212-591)

Oligopeptidase F (Peptidase_M3_N)

(121-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.351

97.69

0.502

Multiple sequence alignment