Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NYE80_RS11735 Genome accession   NZ_CP150192
Coordinates   2695601..2697361 (-) Length   586 a.a.
NCBI ID   WP_038589319.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL H7-0357     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2690601..2702361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE80_RS11715 (NYE80_11715) - 2690785..2691720 (+) 936 WP_038589310.1 aminoglycoside phosphotransferase family protein -
  NYE80_RS11720 (NYE80_11720) - 2691873..2692547 (+) 675 WP_339225832.1 glycerol-3-phosphate acyltransferase -
  NYE80_RS11725 (NYE80_11725) - 2692611..2695067 (+) 2457 WP_038589313.1 O-antigen ligase family protein -
  NYE80_RS11730 (NYE80_11730) - 2695232..2695474 (+) 243 WP_038589316.1 hypothetical protein -
  NYE80_RS11735 (NYE80_11735) rcrQ 2695601..2697361 (-) 1761 WP_038589319.1 ABC transporter ATP-binding protein Regulator
  NYE80_RS11740 (NYE80_11740) rcrP 2697361..2699112 (-) 1752 WP_038589321.1 ABC transporter ATP-binding protein Regulator
  NYE80_RS11745 (NYE80_11745) - 2699233..2700279 (-) 1047 WP_052092512.1 sensor histidine kinase -
  NYE80_RS11750 (NYE80_11750) - 2700285..2700959 (-) 675 WP_038589328.1 response regulator transcription factor -
  NYE80_RS11755 (NYE80_11755) - 2701198..2701635 (+) 438 WP_038589331.1 LytTR family DNA-binding domain-containing protein -
  NYE80_RS11760 (NYE80_11760) - 2701648..2702091 (+) 444 WP_038589334.1 hypothetical protein -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64417.68 Da        Isoelectric Point: 6.5806

>NTDB_id=965693 NYE80_RS11735 WP_038589319.1 2695601..2697361(-) (rcrQ) [Paenibacillus sp. FSL H7-0357]
MNKSKEQLNTWSKLLRYGRKYIPVVLIAIISAAIGTVLTLLGPDKLSEITDLITEGIVTGIDMEAVTSIGLFLVFIYLLS
SVLSLAQGLIMSVVTQKVSKSLRTDLSRKMNRLPISYYNKSTTGDILSRVTNDVDTIGQALNQSVGTLVTALALFVGSLI
MMFKTNVIMTITAIVATVIGFGLMAAIMKKSQKYFQSQQEYLGKINGHVEEVYSGHTVVKAYNGESQMRSTFESLNMNLK
DSAFKAQFLSGLMMPIMMFIGNLGFVAVCVAGAILAMNGTISFGVIVAFILYVRYFTQPLSQIAQAAQSLQSASAASKRV
FEFLDAEEMDNESHKEGHLETAAGKVKFEHVQFAYDNSDKLVIKDFSAEVKPGQKVAIVGPTGAGKTTLVNLLIRFNKLM
GGEIYIDDTPISSLTRENIHDLFCMVLQDTWLFEGTIRENLVYNKTGVTDKEIEEACKSVGLHHFIQTLSAGYDTVLNDK
VNLSTGQKQQLTIARAMLKDAPMLILDEATSSVDTRTELLIQQAMDKLMEGRTSFVIAHRLSTIKNADVILVLKDGDILE
SGSHHELLAKNGFYAELYNSQFEQAS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=965693 NYE80_RS11735 WP_038589319.1 2695601..2697361(-) (rcrQ) [Paenibacillus sp. FSL H7-0357]
ATGAACAAGAGCAAAGAGCAACTCAACACCTGGAGCAAACTTCTCCGCTATGGCAGAAAATATATTCCCGTAGTTCTTAT
TGCAATTATCAGCGCAGCAATCGGCACGGTACTGACTTTGCTCGGGCCGGATAAGCTTTCAGAGATAACAGACTTGATCA
CCGAGGGCATCGTCACCGGTATTGATATGGAAGCCGTAACTTCCATTGGACTCTTCCTTGTATTTATCTATCTCCTTAGC
TCTGTATTGTCTTTGGCACAAGGATTAATCATGTCCGTAGTTACACAGAAGGTTTCCAAAAGCTTAAGAACCGATCTCTC
CCGCAAAATGAACAGGCTTCCGATCTCTTATTATAATAAATCTACAACCGGTGACATCCTGTCCCGGGTGACTAACGACG
TGGATACCATCGGGCAAGCCTTAAATCAAAGTGTCGGCACACTGGTCACCGCCCTCGCCCTGTTTGTCGGGTCTCTCATC
ATGATGTTTAAAACAAATGTGATCATGACCATTACAGCGATTGTTGCCACCGTAATTGGCTTTGGTCTCATGGCGGCAAT
TATGAAAAAATCTCAAAAGTATTTTCAAAGCCAGCAAGAATATTTAGGAAAAATCAATGGCCATGTGGAGGAAGTCTATT
CCGGACATACTGTAGTGAAGGCCTACAATGGCGAATCGCAAATGCGGAGTACATTCGAATCTCTGAATATGAATCTTAAA
GATAGCGCATTTAAAGCACAGTTCCTCTCCGGTCTCATGATGCCGATTATGATGTTTATAGGCAATCTGGGGTTTGTGGC
CGTTTGTGTCGCAGGTGCTATACTTGCTATGAACGGAACGATATCCTTTGGGGTTATTGTGGCCTTCATCCTGTATGTCC
GTTATTTTACACAGCCGCTGTCACAGATTGCGCAAGCCGCACAAAGTCTGCAGTCGGCGTCTGCCGCAAGCAAACGTGTC
TTTGAATTCCTGGATGCCGAAGAAATGGACAATGAGAGTCACAAGGAAGGACATCTTGAAACCGCTGCGGGCAAAGTGAA
ATTTGAGCATGTGCAATTTGCTTATGACAATTCAGACAAGCTTGTTATTAAAGATTTCTCTGCAGAGGTTAAGCCTGGAC
AAAAAGTCGCTATAGTCGGTCCTACCGGCGCAGGTAAAACAACGCTTGTAAACCTTCTAATCCGGTTTAATAAATTAATG
GGCGGGGAAATTTATATTGATGATACCCCGATCAGCAGTTTGACCAGAGAAAACATCCATGATTTATTCTGTATGGTTCT
GCAGGATACCTGGCTTTTTGAGGGCACTATCAGGGAAAACCTAGTGTACAACAAAACGGGTGTAACCGATAAAGAAATCG
AAGAGGCTTGTAAGTCAGTGGGCTTGCACCATTTCATACAGACCTTGAGTGCCGGATATGATACCGTGCTCAACGATAAA
GTCAATTTATCTACCGGGCAAAAGCAACAGCTTACGATCGCCCGCGCGATGCTTAAGGACGCGCCGATGCTCATCCTTGA
TGAAGCAACAAGCTCGGTCGATACAAGAACAGAGCTGTTGATTCAGCAGGCGATGGATAAGCTCATGGAAGGAAGAACCT
CCTTCGTGATTGCACATAGGCTCTCAACAATTAAGAATGCCGATGTGATTCTGGTTCTGAAGGATGGCGATATCTTGGAA
AGCGGCAGCCATCATGAACTGCTTGCCAAAAATGGCTTCTATGCGGAGCTTTACAATAGCCAATTCGAACAAGCATCTTA
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(364-511)

ABC transporter transmembrane region (ABC_membrane)

(25-300)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.717

99.488

0.544

Multiple sequence alignment