Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   ACKFA7_RS17430 Genome accession   NZ_CP175553
Coordinates   3574382..3574501 (+) Length   39 a.a.
NCBI ID   WP_021494790.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 4-9-2     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3569382..3579501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKFA7_RS17410 (ACKFA7_17410) - 3569732..3570244 (+) 513 Protein_3375 bacteriocin biosynthesis protein AlbG -
  ACKFA7_RS17415 (ACKFA7_17415) - 3570251..3571627 (-) 1377 WP_038460210.1 YncE family protein -
  ACKFA7_RS17420 (ACKFA7_17420) - 3571667..3573022 (-) 1356 WP_038460212.1 YncE family protein -
  ACKFA7_RS17425 (ACKFA7_17425) rapF 3573253..3574398 (+) 1146 WP_038464359.1 tetratricopeptide repeat protein Regulator
  ACKFA7_RS17430 (ACKFA7_17430) phrF 3574382..3574501 (+) 120 WP_021494790.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  ACKFA7_RS17435 (ACKFA7_17435) - 3574701..3574904 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  ACKFA7_RS17440 (ACKFA7_17440) - 3574918..3575121 (+) 204 WP_007407641.1 hypothetical protein -
  ACKFA7_RS17445 (ACKFA7_17445) - 3575156..3575340 (+) 185 Protein_3382 DUF4177 domain-containing protein -
  ACKFA7_RS17450 (ACKFA7_17450) - 3575527..3575808 (+) 282 WP_007407643.1 hypothetical protein -
  ACKFA7_RS17455 (ACKFA7_17455) - 3575852..3576364 (+) 513 WP_007614439.1 stage II sporulation protein M -
  ACKFA7_RS17460 (ACKFA7_17460) - 3576955..3577173 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  ACKFA7_RS17465 (ACKFA7_17465) speB 3577342..3578214 (-) 873 WP_007614448.1 agmatinase -
  ACKFA7_RS17470 (ACKFA7_17470) speE 3578273..3579103 (-) 831 WP_038464362.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4266.10 Da        Isoelectric Point: 8.0195

>NTDB_id=965640 ACKFA7_RS17430 WP_021494790.1 3574382..3574501(+) (phrF) [Bacillus amyloliquefaciens strain 4-9-2]
MKLKYKLALTCLAIGTIFVSADIASAPEHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=965640 ACKFA7_RS17430 WP_021494790.1 3574382..3574501(+) (phrF) [Bacillus amyloliquefaciens strain 4-9-2]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTAGCGATAGGCACTATTTTTGTTTCAGCCGACATTGCAAGTGCACC
GGAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterProScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487
  phrF Bacillus subtilis subsp. subtilis str. 168

66.667

69.231

0.462