Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACKFA7_RS12980 Genome accession   NZ_CP175553
Coordinates   2712633..2714405 (-) Length   590 a.a.
NCBI ID   WP_038459410.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 4-9-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2707633..2719405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKFA7_RS12960 (ACKFA7_12960) sdhA 2707845..2709605 (-) 1761 WP_003152573.1 succinate dehydrogenase flavoprotein subunit -
  ACKFA7_RS12965 (ACKFA7_12965) sdhC 2709639..2710247 (-) 609 WP_038459406.1 succinate dehydrogenase cytochrome B558 -
  ACKFA7_RS12970 (ACKFA7_12970) - 2710544..2710990 (+) 447 WP_007612940.1 YslB family protein -
  ACKFA7_RS12975 (ACKFA7_12975) - 2711037..2712266 (-) 1230 WP_038459408.1 aspartate kinase -
  ACKFA7_RS12980 (ACKFA7_12980) uvrC 2712633..2714405 (-) 1773 WP_038459410.1 excinuclease ABC subunit UvrC Machinery gene
  ACKFA7_RS12985 (ACKFA7_12985) trxA 2714548..2714862 (-) 315 WP_003152560.1 thioredoxin -
  ACKFA7_RS12990 (ACKFA7_12990) - 2715016..2716506 (-) 1491 WP_038459412.1 alpha-N-arabinofuranosidase -
  ACKFA7_RS12995 (ACKFA7_12995) - 2716719..2717696 (-) 978 WP_007612948.1 electron transfer flavoprotein subunit alpha/FixB family protein -
  ACKFA7_RS13000 (ACKFA7_13000) - 2717728..2718501 (-) 774 WP_038459413.1 electron transfer flavoprotein subunit beta/FixA family protein -
  ACKFA7_RS13005 (ACKFA7_13005) - 2718515..2719294 (-) 780 WP_015417952.1 enoyl-CoA hydratase -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 68390.30 Da        Isoelectric Point: 9.6173

>NTDB_id=965608 ACKFA7_RS12980 WP_038459410.1 2712633..2714405(-) (uvrC) [Bacillus amyloliquefaciens strain 4-9-2]
MNKQLKEKLTLLPDQPGCYLMKDRQKTVIYVGKAKVLKNRVRSYFTGSHDAKTQRLVTEIEDFEYIVTSSNLEALILEMN
LIKKYDPKYNVMLKDDKTYPFIKITHERHPRLIVTRNVKKDKGRYFGPYPNVQAARETKKLLDRLYPLRKCSKLPDRVCL
YYHLGQCLAPCVKDISEETNREIVEDITRFLKGGHNEIKKELEAKMAEAAEKLEFERAKEFRDQLAHIESTMEKQKMTMN
DLLDRDVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQEADEEFLTFIGQFYSKNNHFLPKEILVPESVDRDMISEL
FETAVHQPKKGPKKELLLLAHKNAKIALREKFSLIERDEERSIGAAERLGEALNIYTPHRIEAFDNSNIQGANPVSAMIV
FIDGKPNKKEYRKYKIKTVTGPDDYGSMREVVRRRYTRVLRENLPLPDLIIIDGGKGQINAARDVLENELGLDVPVAGLA
KDDKHRTSNLLIGDPLEPVFLERNSQEFYLLQRIQDEVHRFAISFHRQIRGKSVFQSVLDDIPGIGEKRKKMLLKHFGSV
KKMKEASLDDIKKAGVPAAAAQLLFEKLKK

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=965608 ACKFA7_RS12980 WP_038459410.1 2712633..2714405(-) (uvrC) [Bacillus amyloliquefaciens strain 4-9-2]
ATGAATAAACAACTGAAAGAAAAACTGACCCTCCTTCCCGATCAGCCGGGCTGTTATTTAATGAAAGACCGTCAAAAAAC
AGTCATCTACGTGGGGAAAGCGAAAGTCTTGAAAAACAGGGTGCGCTCTTATTTCACCGGTTCTCATGACGCAAAAACCC
AACGGCTTGTGACGGAGATTGAGGACTTTGAATATATCGTGACTTCCTCCAATCTTGAAGCGCTTATTTTGGAAATGAAT
CTGATTAAAAAATACGATCCGAAATACAATGTCATGCTGAAAGATGATAAAACCTATCCCTTTATTAAAATCACCCATGA
ACGCCATCCGCGGCTGATTGTCACCCGGAATGTCAAAAAAGACAAAGGACGCTATTTCGGCCCGTATCCGAATGTGCAGG
CGGCGCGGGAAACGAAAAAACTGCTGGACCGCCTTTACCCGCTCAGGAAATGTTCAAAGCTTCCGGACCGCGTCTGTCTC
TATTATCATCTCGGACAATGCCTCGCCCCATGTGTAAAGGATATATCTGAGGAGACAAACCGCGAGATTGTTGAAGACAT
CACCCGTTTTTTAAAGGGAGGGCATAACGAAATCAAAAAAGAGCTCGAAGCGAAAATGGCAGAAGCGGCGGAAAAGCTTG
AATTTGAACGGGCTAAAGAATTCCGCGACCAGCTTGCTCACATCGAATCGACGATGGAGAAGCAAAAAATGACCATGAAT
GACCTTCTGGACCGCGATGTGTTTGCATATGCCTACGATAAAGGCTGGATGTGCGTCCAAGTCTTTTTCATTCGCCAAGG
AAAACTGATCGAACGCGACGTCAGCATGTTTCCGATGTATCAGGAAGCGGATGAAGAATTTCTGACCTTCATCGGCCAGT
TCTATTCTAAAAACAATCACTTTCTGCCTAAGGAAATTCTGGTGCCTGAGAGCGTTGACAGGGACATGATCAGCGAGCTG
TTTGAAACCGCCGTGCATCAGCCGAAAAAAGGCCCGAAAAAAGAGCTGCTTTTGCTTGCGCACAAAAATGCGAAAATCGC
CCTGCGGGAAAAATTCTCGTTAATCGAGCGGGATGAGGAACGGTCAATCGGTGCAGCCGAACGGCTCGGCGAAGCGCTGA
ATATTTACACGCCGCATCGGATTGAAGCGTTTGACAACTCCAATATTCAAGGCGCAAACCCCGTATCGGCCATGATTGTC
TTTATTGACGGAAAACCGAATAAAAAGGAATACCGCAAATATAAAATTAAAACCGTAACAGGGCCGGATGATTACGGTTC
AATGAGGGAAGTCGTCAGAAGAAGGTACACGAGGGTGCTCCGCGAAAACCTTCCGCTGCCGGATTTAATCATCATTGACG
GCGGAAAAGGGCAGATTAACGCGGCGCGCGACGTGCTCGAGAATGAGCTCGGCCTTGATGTACCGGTAGCGGGATTGGCG
AAAGATGATAAACACCGAACATCCAACCTTTTGATCGGCGACCCGCTTGAACCGGTGTTTCTGGAGCGGAACAGCCAAGA
GTTTTACCTGCTTCAGCGTATTCAGGACGAAGTTCACCGTTTTGCGATCAGCTTTCACAGACAGATCCGGGGAAAAAGCG
TCTTTCAATCCGTTCTGGATGATATCCCCGGAATCGGCGAAAAACGCAAAAAAATGCTCTTAAAACATTTCGGATCTGTC
AAAAAGATGAAGGAAGCAAGCCTTGACGATATCAAAAAAGCGGGTGTGCCGGCCGCGGCGGCCCAGCTGCTGTTTGAAAA
ATTAAAAAAATAG

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(16-90)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-523)

UvrB/uvrC motif (UVR)

(198-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

59.524

99.661

0.593
  uvrC Streptococcus pneumoniae R6

59.184

99.661

0.59
  uvrC Streptococcus pneumoniae D39

59.184

99.661

0.59