Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   NSQ94_RS18035 Genome accession   NZ_CP150189
Coordinates   3766190..3766573 (-) Length   127 a.a.
NCBI ID   WP_339193564.1    Uniprot ID   -
Organism   Aeribacillus sp. FSL K6-2833     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3761190..3771573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ94_RS18030 (NSQ94_18030) - 3762609..3765356 (+) 2748 WP_339193563.1 DEAD/DEAH box helicase -
  NSQ94_RS18035 (NSQ94_18035) ssbB 3766190..3766573 (-) 384 WP_339193564.1 single-stranded DNA-binding protein Machinery gene
  NSQ94_RS18040 (NSQ94_18040) - 3766721..3767116 (-) 396 WP_063388990.1 hypothetical protein -
  NSQ94_RS18045 (NSQ94_18045) - 3767376..3767777 (+) 402 WP_063388991.1 helix-turn-helix transcriptional regulator -
  NSQ94_RS18050 (NSQ94_18050) - 3767851..3768309 (+) 459 WP_066248032.1 YwpF-like family protein -
  NSQ94_RS18055 (NSQ94_18055) - 3768595..3768855 (-) 261 WP_063388993.1 hypothetical protein -
  NSQ94_RS18060 (NSQ94_18060) fabZ 3769344..3769766 (-) 423 WP_063388994.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NSQ94_RS18065 (NSQ94_18065) - 3769966..3770235 (-) 270 WP_339229770.1 DNA-directed RNA polymerase subunit beta -
  NSQ94_RS18070 (NSQ94_18070) - 3770419..3771249 (-) 831 WP_339229773.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14216.01 Da        Isoelectric Point: 7.8527

>NTDB_id=965591 NSQ94_RS18035 WP_339193564.1 3766190..3766573(-) (ssbB) [Aeribacillus sp. FSL K6-2833]
MINHVTLVGRLTKDPEIRYTSEGAPVANITLAVSRNFRNAAGEIDTDFVHCTLWRRTAENTANYCRKGSIVGVIGRIQTR
NYENSEGKKVYVAEVVADSVRFMGTPPQRMRARELFDPESAPEQSEA

Nucleotide


Download         Length: 384 bp        

>NTDB_id=965591 NSQ94_RS18035 WP_339193564.1 3766190..3766573(-) (ssbB) [Aeribacillus sp. FSL K6-2833]
GTGATCAACCATGTGACGCTCGTCGGTCGATTAACGAAGGATCCTGAAATCCGCTATACAAGTGAAGGGGCTCCTGTTGC
CAATATTACGCTGGCTGTGAGCCGCAACTTTCGCAATGCGGCAGGGGAAATCGACACAGATTTTGTTCATTGTACACTTT
GGAGACGAACAGCTGAAAATACTGCAAATTACTGCCGGAAAGGATCGATCGTTGGCGTAATCGGAAGAATTCAAACGCGC
AACTATGAAAACAGCGAGGGCAAAAAAGTGTACGTAGCAGAAGTTGTTGCGGATTCCGTTCGATTTATGGGCACTCCGCC
GCAAAGAATGCGGGCAAGAGAGCTTTTCGATCCGGAATCCGCACCTGAACAGTCTGAGGCATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

67.857

88.189

0.598
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.165

81.102

0.496
  ssb Latilactobacillus sakei subsp. sakei 23K

56.311

81.102

0.457
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.202

85.827

0.362

Multiple sequence alignment