Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   ACKFA7_RS07325 Genome accession   NZ_CP175553
Coordinates   1498354..1499376 (+) Length   340 a.a.
NCBI ID   WP_038457918.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 4-9-2     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1493354..1504376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKFA7_RS07285 (ACKFA7_07285) - 1493713..1493952 (+) 240 WP_003154475.1 YlbE-like family protein -
  ACKFA7_RS07290 (ACKFA7_07290) ylbF 1494023..1494472 (+) 450 WP_003154472.1 YlbF family regulator Regulator
  ACKFA7_RS07295 (ACKFA7_07295) - 1494531..1494803 (+) 273 WP_014417705.1 YlbG family protein -
  ACKFA7_RS07300 (ACKFA7_07300) - 1494894..1495103 (+) 210 WP_007409692.1 hypothetical protein -
  ACKFA7_RS07305 (ACKFA7_07305) rsmD 1495103..1495657 (+) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACKFA7_RS07310 (ACKFA7_07310) coaD 1495662..1496144 (+) 483 WP_007409694.1 pantetheine-phosphate adenylyltransferase -
  ACKFA7_RS07315 (ACKFA7_07315) ylbJ 1496163..1497389 (-) 1227 WP_003154466.1 sporulation integral membrane protein YlbJ -
  ACKFA7_RS07320 (ACKFA7_07320) - 1497569..1498348 (+) 780 WP_014304961.1 patatin family protein -
  ACKFA7_RS07325 (ACKFA7_07325) sepM 1498354..1499376 (+) 1023 WP_038457918.1 SepM family pheromone-processing serine protease Regulator
  ACKFA7_RS07330 (ACKFA7_07330) - 1499396..1500643 (-) 1248 WP_038457920.1 nucleotidyltransferase -
  ACKFA7_RS07335 (ACKFA7_07335) - 1500852..1501370 (+) 519 WP_007611260.1 DUF177 domain-containing protein -
  ACKFA7_RS07340 (ACKFA7_07340) rpmF 1501392..1501571 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  ACKFA7_RS07345 (ACKFA7_07345) gerR 1501731..1502306 (+) 576 WP_003154450.1 sporulation-specific transcriptional regulator GerR -
  ACKFA7_RS07350 (ACKFA7_07350) - 1502347..1502829 (-) 483 WP_007611262.1 N-acetyltransferase -
  ACKFA7_RS07355 (ACKFA7_07355) - 1502992..1503873 (+) 882 WP_038457922.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37452.94 Da        Isoelectric Point: 7.3838

>NTDB_id=965559 ACKFA7_RS07325 WP_038457918.1 1498354..1499376(+) (sepM) [Bacillus amyloliquefaciens strain 4-9-2]
MKAKHFRWVFIILILLIAVTFIKLPYYITQPGEASELRPLIKVDGGYPEKGSLSLMTVKVGPANPYTYLWAKVHPYDEIV
SDESIKEEGESDSDYMKRQLQMMKSSQENAVIAAYQKAGRQVKYSFNGIYASSVVSDMPAKGKIEVGDKIISADGKTYES
AEKLIDYISSKKAGEKVTFHIERDTKEKTVDIVLKSFPDDPKRAGIGVALYTDRNVKVKPDLHFSIENIGGPSAGLMMSL
EIYNQLTKPDETKGYNIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGAENSDYKNAVKTAKAIKSDMKIV
PVDTMQDALDYLDQLKVKST

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=965559 ACKFA7_RS07325 WP_038457918.1 1498354..1499376(+) (sepM) [Bacillus amyloliquefaciens strain 4-9-2]
ATGAAAGCAAAACATTTTCGCTGGGTGTTTATCATCCTGATCTTATTAATCGCTGTTACATTTATTAAGCTTCCGTATTA
CATCACACAGCCGGGAGAAGCATCAGAGCTGAGACCGCTGATTAAGGTGGACGGAGGCTATCCTGAAAAAGGAAGCCTTT
CCTTGATGACTGTCAAAGTAGGCCCCGCCAATCCGTATACATATCTTTGGGCGAAAGTGCATCCTTACGATGAAATCGTC
TCTGATGAAAGCATAAAAGAAGAGGGCGAATCGGACTCGGATTATATGAAGCGCCAGCTGCAAATGATGAAAAGCTCCCA
AGAAAACGCGGTCATTGCCGCTTATCAAAAAGCCGGGAGACAGGTGAAATACTCATTTAACGGCATTTATGCCAGCTCAG
TCGTCTCTGACATGCCGGCAAAAGGAAAAATAGAGGTCGGTGATAAAATCATCAGCGCGGACGGGAAAACATACGAATCC
GCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGGGAAAAAGTAACGTTTCACATTGAACGGGACACGAAAGA
AAAGACCGTTGACATTGTGCTGAAATCATTCCCGGACGACCCGAAAAGAGCGGGAATCGGCGTCGCATTATATACGGACC
GGAACGTGAAAGTGAAGCCGGATCTTCATTTCAGCATTGAAAACATCGGCGGGCCTTCTGCGGGTCTCATGATGTCTTTA
GAAATTTACAACCAGCTGACAAAACCTGACGAAACAAAAGGCTATAATATAGCCGGAACGGGGACAATCGACGTGGATGG
CAAAGTCGGACCGATCGGCGGAATCGATCAGAAAGTCGTCGCCGCAGACAAAGCGGGAAAAGATATTTTCTTTGCGCCGA
ATCAAAACGGAGCTGAAAATTCTGATTACAAAAATGCGGTAAAAACGGCGAAAGCAATCAAGTCCGATATGAAGATCGTC
CCTGTCGACACCATGCAGGACGCACTTGACTATTTGGATCAGCTGAAAGTAAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(230-330)

Peptidase family M50 (Peptidase_M50)

(85-218)

PDZ domain (PDZ_2)

(127-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

38.304

100

0.385