Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   ACKFA7_RS07290 Genome accession   NZ_CP175553
Coordinates   1494023..1494472 (+) Length   149 a.a.
NCBI ID   WP_003154472.1    Uniprot ID   A7Z4C2
Organism   Bacillus amyloliquefaciens strain 4-9-2     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1489023..1499472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKFA7_RS07250 (ACKFA7_07250) ctaE 1489152..1489775 (+) 624 WP_003154482.1 cytochrome c oxidase subunit III -
  ACKFA7_RS07255 (ACKFA7_07255) ctaF 1489778..1490110 (+) 333 WP_007409686.1 cytochrome c oxidase subunit IVB -
  ACKFA7_RS07260 (ACKFA7_07260) ctaG 1490135..1491019 (+) 885 WP_108654828.1 cytochrome c oxidase assembly factor CtaG -
  ACKFA7_RS07265 (ACKFA7_07265) - 1491054..1491413 (-) 360 WP_007409688.1 YugN family protein -
  ACKFA7_RS07270 (ACKFA7_07270) - 1491554..1491997 (+) 444 WP_038457909.1 CBS domain-containing protein -
  ACKFA7_RS07275 (ACKFA7_07275) - 1492082..1493122 (+) 1041 WP_015388277.1 CAP domain-containing protein -
  ACKFA7_RS07280 (ACKFA7_07280) - 1493287..1493697 (+) 411 WP_038457911.1 YlbD family protein -
  ACKFA7_RS07285 (ACKFA7_07285) - 1493713..1493952 (+) 240 WP_003154475.1 YlbE-like family protein -
  ACKFA7_RS07290 (ACKFA7_07290) ylbF 1494023..1494472 (+) 450 WP_003154472.1 YlbF family regulator Regulator
  ACKFA7_RS07295 (ACKFA7_07295) - 1494531..1494803 (+) 273 WP_014417705.1 YlbG family protein -
  ACKFA7_RS07300 (ACKFA7_07300) - 1494894..1495103 (+) 210 WP_007409692.1 hypothetical protein -
  ACKFA7_RS07305 (ACKFA7_07305) rsmD 1495103..1495657 (+) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACKFA7_RS07310 (ACKFA7_07310) coaD 1495662..1496144 (+) 483 WP_007409694.1 pantetheine-phosphate adenylyltransferase -
  ACKFA7_RS07315 (ACKFA7_07315) ylbJ 1496163..1497389 (-) 1227 WP_003154466.1 sporulation integral membrane protein YlbJ -
  ACKFA7_RS07320 (ACKFA7_07320) - 1497569..1498348 (+) 780 WP_014304961.1 patatin family protein -
  ACKFA7_RS07325 (ACKFA7_07325) sepM 1498354..1499376 (+) 1023 WP_038457918.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16777.86 Da        Isoelectric Point: 4.8089

>NTDB_id=965558 ACKFA7_RS07290 WP_003154472.1 1494023..1494472(+) (ylbF) [Bacillus amyloliquefaciens strain 4-9-2]
MYATIESVKLQSEAEQLAGMILQSETAENYRDCYKRLREDEEAGRIIRSFMSVKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=965558 ACKFA7_RS07290 WP_003154472.1 1494023..1494472(+) (ylbF) [Bacillus amyloliquefaciens strain 4-9-2]
ATGTATGCAACAATTGAGTCCGTCAAGCTTCAAAGTGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCGTGAAGATGAAGAGGCAGGGCGGATCATTCGTTCATTTATGAGCGTTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATACCATCCTGATTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAACGGGAACTGGATTTAAACGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGATGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTTCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGGTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

87.919

100

0.879