Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NSQ42_RS16360 Genome accession   NZ_CP150184
Coordinates   3128399..3129043 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-0812     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3123399..3134043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ42_RS16325 (NSQ42_16325) - 3124591..3125022 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  NSQ42_RS16330 (NSQ42_16330) - 3125022..3125363 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  NSQ42_RS16335 (NSQ42_16335) - 3125356..3126837 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  NSQ42_RS16340 (NSQ42_16340) - 3126843..3127319 (+) 477 WP_029318490.1 Na+/H+ antiporter subunit E -
  NSQ42_RS16345 (NSQ42_16345) - 3127319..3127603 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  NSQ42_RS16350 (NSQ42_16350) mnhG 3127587..3127961 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  NSQ42_RS16355 (NSQ42_16355) - 3128000..3128380 (-) 381 WP_015714624.1 hotdog fold thioesterase -
  NSQ42_RS16360 (NSQ42_16360) comA 3128399..3129043 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  NSQ42_RS16365 (NSQ42_16365) - 3129124..3131441 (-) 2318 Protein_3157 histidine kinase -
  NSQ42_RS16370 (NSQ42_16370) comX 3131457..3131678 (-) 222 WP_014480704.1 competence pheromone ComX -
  NSQ42_RS16375 (NSQ42_16375) - 3131680..3132543 (-) 864 WP_043858576.1 polyprenyl synthetase family protein -
  NSQ42_RS16380 (NSQ42_16380) degQ 3132728..3132868 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  NSQ42_RS16385 (NSQ42_16385) - 3133090..3133215 (+) 126 WP_003228793.1 hypothetical protein -
  NSQ42_RS16390 (NSQ42_16390) - 3133329..3133697 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=965384 NSQ42_RS16360 WP_003220716.1 3128399..3129043(-) (comA) [Bacillus sp. FSL W8-0812]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=965384 NSQ42_RS16360 WP_003220716.1 3128399..3129043(-) (comA) [Bacillus sp. FSL W8-0812]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment