Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   NSQ23_RS04330 Genome accession   NZ_CP150179
Coordinates   826855..827604 (+) Length   249 a.a.
NCBI ID   WP_339173248.1    Uniprot ID   -
Organism   Anoxybacillus sp. FSL W8-1294     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 821855..832604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ23_RS04310 (NSQ23_04310) - 822250..823911 (+) 1662 WP_339173240.1 ATPase, T2SS/T4P/T4SS family -
  NSQ23_RS04315 (NSQ23_04315) pilT 823927..824961 (+) 1035 WP_339173243.1 type IV pilus twitching motility protein PilT Machinery gene
  NSQ23_RS04320 (NSQ23_04320) - 824968..826179 (+) 1212 WP_339173245.1 type II secretion system F family protein -
  NSQ23_RS04325 (NSQ23_04325) - 826265..826783 (+) 519 WP_064214441.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  NSQ23_RS04330 (NSQ23_04330) comC 826855..827604 (+) 750 WP_339173248.1 A24 family peptidase Machinery gene
  NSQ23_RS04335 (NSQ23_04335) pilM 827618..828586 (+) 969 WP_339173251.1 pilus assembly protein PilM -
  NSQ23_RS04340 (NSQ23_04340) - 828570..829151 (+) 582 WP_339173254.1 PilN domain-containing protein -
  NSQ23_RS04345 (NSQ23_04345) pilO 829148..829774 (+) 627 WP_339173256.1 type 4a pilus biogenesis protein PilO -
  NSQ23_RS04350 (NSQ23_04350) - 829787..830227 (+) 441 WP_339173258.1 type II secretion system protein -
  NSQ23_RS04355 (NSQ23_04355) - 830334..831110 (+) 777 WP_339173260.1 SPOR domain-containing protein -
  NSQ23_RS04360 (NSQ23_04360) - 831227..831796 (+) 570 WP_339174281.1 Maf family protein -
  NSQ23_RS04365 (NSQ23_04365) radC 831825..832499 (+) 675 WP_003396335.1 DNA repair protein RadC -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 27243.15 Da        Isoelectric Point: 9.1423

>NTDB_id=965170 NSQ23_RS04330 WP_339173248.1 826855..827604(+) (comC) [Anoxybacillus sp. FSL W8-1294]
MLFFISFLLGLLLGSFYNVVGLRVPKGESIVAPRSHCPSCKRTLTALELIPVVSYVLQKGKCRACSARISFVYPFVELST
AMLFALAPLFVGWSAEIIVSWTLISLFVIIFVSDVHYMIIPNRVLLFFAPLLLIERLWFAPLTPWWDSLLGSIVGFLMLF
IIALISKGGMGGGDIKLFAVIGLALGVKLTILAFFLSTLVGTIFGLVGMAMGHVKRGEPMPFGPAIAVGTMIAYFFGEAM
IEAYVNVMM

Nucleotide


Download         Length: 750 bp        

>NTDB_id=965170 NSQ23_RS04330 WP_339173248.1 826855..827604(+) (comC) [Anoxybacillus sp. FSL W8-1294]
ATGTTGTTTTTTATTTCTTTCCTCCTCGGTCTTCTTCTCGGTTCTTTTTATAACGTTGTTGGGTTAAGGGTGCCGAAAGG
GGAGTCGATTGTTGCGCCGCGTTCGCATTGTCCGTCTTGTAAGCGAACGTTGACGGCGTTGGAGTTAATTCCGGTCGTGT
CGTATGTGTTACAAAAAGGGAAATGTCGCGCATGTTCAGCGCGCATTTCCTTTGTTTACCCATTCGTTGAGCTGTCCACG
GCGATGCTGTTTGCGCTTGCCCCACTTTTTGTCGGTTGGTCAGCGGAAATCATCGTTAGTTGGACGCTCATTTCTTTATT
CGTTATTATTTTCGTTTCTGATGTGCATTATATGATTATTCCAAACCGTGTTTTATTATTTTTCGCCCCACTTCTTCTTA
TTGAGCGTCTATGGTTTGCGCCGCTTACTCCGTGGTGGGATAGTTTGTTAGGCAGCATCGTTGGATTTTTGATGTTATTT
ATTATCGCGCTCATAAGTAAAGGTGGCATGGGTGGTGGAGATATTAAACTGTTTGCCGTGATCGGTTTGGCGCTTGGGGT
CAAACTGACGATTTTAGCGTTCTTTTTATCGACGCTCGTCGGGACAATATTCGGGCTTGTCGGCATGGCGATGGGGCATG
TGAAGCGTGGTGAACCGATGCCGTTTGGGCCAGCGATTGCTGTCGGAACAATGATCGCTTACTTTTTTGGTGAAGCAATG
ATCGAGGCATACGTCAATGTTATGATGTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-87)

Type IV leader peptidase family (Peptidase_A24)

(103-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

50.612

98.394

0.498
  pilD Vibrio cholerae strain A1552

32.042

100

0.365

Multiple sequence alignment