Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NSU05_RS15980 Genome accession   NZ_CP150177
Coordinates   3100188..3100832 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus sp. EU52     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3095188..3105832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU05_RS15945 (NSU05_15945) - 3096380..3096811 (+) 432 WP_038429537.1 Na(+)/H(+) antiporter subunit B -
  NSU05_RS15950 (NSU05_15950) - 3096811..3097152 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  NSU05_RS15955 (NSU05_15955) - 3097145..3098626 (+) 1482 WP_038429539.1 Na+/H+ antiporter subunit D -
  NSU05_RS15960 (NSU05_15960) - 3098632..3099108 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  NSU05_RS15965 (NSU05_15965) - 3099108..3099392 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  NSU05_RS15970 (NSU05_15970) mnhG 3099376..3099750 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  NSU05_RS15975 (NSU05_15975) - 3099789..3100169 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  NSU05_RS15980 (NSU05_15980) comA 3100188..3100832 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  NSU05_RS15985 (NSU05_15985) comP 3100913..3103225 (-) 2313 WP_032722435.1 histidine kinase Regulator
  NSU05_RS15990 (NSU05_15990) comX 3103241..3103462 (-) 222 WP_014480704.1 competence pheromone ComX -
  NSU05_RS15995 (NSU05_15995) - 3103464..3104327 (-) 864 WP_032722437.1 polyprenyl synthetase family protein -
  NSU05_RS16000 (NSU05_16000) degQ 3104512..3104652 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  NSU05_RS16005 (NSU05_16005) - 3104874..3104999 (+) 126 WP_003228793.1 hypothetical protein -
  NSU05_RS16010 (NSU05_16010) - 3105113..3105481 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=965106 NSU05_RS15980 WP_003220716.1 3100188..3100832(-) (comA) [Bacillus sp. EU52]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=965106 NSU05_RS15980 WP_003220716.1 3100188..3100832(-) (comA) [Bacillus sp. EU52]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment