Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NSU05_RS01960 Genome accession   NZ_CP150177
Coordinates   364568..365017 (-) Length   149 a.a.
NCBI ID   WP_017696127.1    Uniprot ID   -
Organism   Bacillus sp. EU52     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 359568..370017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU05_RS01925 (NSU05_01925) - 359721..360401 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  NSU05_RS01930 (NSU05_01930) - 360411..361274 (-) 864 WP_029727074.1 transporter substrate-binding domain-containing protein -
  NSU05_RS01935 (NSU05_01935) - 361436..361633 (+) 198 WP_119122841.1 hypothetical protein -
  NSU05_RS01940 (NSU05_01940) - 361652..362107 (+) 456 WP_038428340.1 RDD family protein -
  NSU05_RS01945 (NSU05_01945) - 362189..362521 (+) 333 WP_015252849.1 YckD family protein -
  NSU05_RS01950 (NSU05_01950) bglC 362673..364106 (+) 1434 WP_038428341.1 6-phospho-beta-glucosidase -
  NSU05_RS01955 (NSU05_01955) nin/comJ 364143..364541 (-) 399 WP_017696126.1 DNA-entry nuclease inhibitor Regulator
  NSU05_RS01960 (NSU05_01960) nucA/comI 364568..365017 (-) 450 WP_017696127.1 DNA-entry nuclease Machinery gene
  NSU05_RS01965 (NSU05_01965) tlpC 365185..366906 (-) 1722 WP_038428342.1 methyl-accepting chemotaxis protein TlpC -
  NSU05_RS01970 (NSU05_01970) hxlB 367017..367574 (-) 558 WP_038428343.1 6-phospho-3-hexuloisomerase -
  NSU05_RS01975 (NSU05_01975) hxlA 367580..368212 (-) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  NSU05_RS01980 (NSU05_01980) hxlR 368446..368808 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16412.34 Da        Isoelectric Point: 4.5282

>NTDB_id=965051 NSU05_RS01960 WP_017696127.1 364568..365017(-) (nucA/comI) [Bacillus sp. EU52]
MNITTDIIKTILLVIVIIAAAAAGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=965051 NSU05_RS01960 WP_017696127.1 364568..365017(-) (nucA/comI) [Bacillus sp. EU52]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGCCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGAT
ATCCCGAAACGGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98

Multiple sequence alignment