Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NSU16_RS17535 Genome accession   NZ_CP150176
Coordinates   3426451..3427140 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. FSL K6-1003     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3421451..3432140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU16_RS17500 (NSU16_17500) flgN 3421631..3422113 (-) 483 WP_010332064.1 flagellar protein FlgN -
  NSU16_RS17505 (NSU16_17505) flgM 3422129..3422395 (-) 267 WP_010332065.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSU16_RS17510 (NSU16_17510) - 3422475..3422894 (-) 420 WP_198098075.1 TIGR03826 family flagellar region protein -
  NSU16_RS17515 (NSU16_17515) comFC 3422968..3423690 (-) 723 WP_339191638.1 double zinc ribbon domain-containing protein Machinery gene
  NSU16_RS17520 (NSU16_17520) - 3423654..3423950 (-) 297 WP_326331979.1 late competence development ComFB family protein -
  NSU16_RS17525 (NSU16_17525) comFA 3424007..3425401 (-) 1395 WP_339191639.1 ATP-dependent helicase ComFA Machinery gene
  NSU16_RS17530 (NSU16_17530) - 3425508..3426353 (-) 846 WP_339191640.1 DegV family protein -
  NSU16_RS17535 (NSU16_17535) degU 3426451..3427140 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NSU16_RS17540 (NSU16_17540) degS 3427223..3428380 (-) 1158 WP_010332072.1 two-component sensor histidine kinase DegS Regulator
  NSU16_RS17545 (NSU16_17545) - 3428597..3429250 (+) 654 WP_010332073.1 YigZ family protein -
  NSU16_RS17550 (NSU16_17550) - 3429250..3430416 (+) 1167 WP_010332074.1 LCP family protein -
  NSU16_RS17555 (NSU16_17555) - 3430491..3431567 (-) 1077 WP_010332075.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=965034 NSU16_RS17535 WP_003219701.1 3426451..3427140(-) (degU) [Bacillus sp. FSL K6-1003]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=965034 NSU16_RS17535 WP_003219701.1 3426451..3427140(-) (degU) [Bacillus sp. FSL K6-1003]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTGAAGCGGATATTGGATTTCGAACC
TACCTTTGAAGTGGTAGCGGAAGGAGACGACGGAGATGAAGCGGCTCGTATCGTTGAGCACTATCATCCTGATGTCGTGA
TCATGGATATCAATATGCCGAACGTAAATGGCGTGGAAGCTACAAAGCAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCGATTCACGATGACGAGAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACACTGATTGAAGCAGTTAAAGTAGTTGCCGAGGGCGGTTCTTACCTTCACCCGAAGGTTACTCACA
ACCTCGTAAACGAATTCCGCCGTCTTGCAACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTCTATCCAGAGATTCGC
AGACCATTACATATTTTAACAAGGCGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAAAAAACTGTTAAAAACCATGTCAGCAATATCTTACAAAAAATGAATGTAAACGACCGGA
CGCAGGCCGTGGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment