Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NSU16_RS17525 Genome accession   NZ_CP150176
Coordinates   3424007..3425401 (-) Length   464 a.a.
NCBI ID   WP_339191639.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1003     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3419007..3430401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU16_RS17490 (NSU16_17490) flgL 3419183..3420079 (-) 897 WP_326218445.1 flagellar hook-associated protein FlgL -
  NSU16_RS17495 (NSU16_17495) flgK 3420089..3421612 (-) 1524 WP_339191637.1 flagellar hook-associated protein FlgK -
  NSU16_RS17500 (NSU16_17500) flgN 3421631..3422113 (-) 483 WP_010332064.1 flagellar protein FlgN -
  NSU16_RS17505 (NSU16_17505) flgM 3422129..3422395 (-) 267 WP_010332065.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSU16_RS17510 (NSU16_17510) - 3422475..3422894 (-) 420 WP_198098075.1 TIGR03826 family flagellar region protein -
  NSU16_RS17515 (NSU16_17515) comFC 3422968..3423690 (-) 723 WP_339191638.1 double zinc ribbon domain-containing protein Machinery gene
  NSU16_RS17520 (NSU16_17520) - 3423654..3423950 (-) 297 WP_326331979.1 late competence development ComFB family protein -
  NSU16_RS17525 (NSU16_17525) comFA 3424007..3425401 (-) 1395 WP_339191639.1 ATP-dependent helicase ComFA Machinery gene
  NSU16_RS17530 (NSU16_17530) - 3425508..3426353 (-) 846 WP_339191640.1 DegV family protein -
  NSU16_RS17535 (NSU16_17535) degU 3426451..3427140 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NSU16_RS17540 (NSU16_17540) degS 3427223..3428380 (-) 1158 WP_010332072.1 two-component sensor histidine kinase DegS Regulator
  NSU16_RS17545 (NSU16_17545) - 3428597..3429250 (+) 654 WP_010332073.1 YigZ family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52901.01 Da        Isoelectric Point: 9.9972

>NTDB_id=965033 NSU16_RS17525 WP_339191639.1 3424007..3425401(-) (comFA) [Bacillus sp. FSL K6-1003]
MQTKTSESNSLFSKELQQQLQSRHLLRTEISFSDEIIDWHTEHGYISAEESLSKNKRGYRCNRCGQNDQQYFSSYHSFGK
DKVYCRSCVMMGRVSEDVSLYSWSKEAEANWKPIKLTWDGKLSSGQQKAAAVLIEAISKQEELLIWAVCGAGKTELLFPG
IELALNLKQRVCIATPRTDVVLELAPRLKAAFRGADISALYGGSEDKGRLSPLIISTTHQLLRYKDAFDVMIVDEVDAFP
YSADQTLQFAVQKARKKNSTLVYLSATPPKELKRKTYKGELKSVRIPARYHRKPLPEPRFQWCGNWKKKLIRNKIPNAVK
RWIEQHVKEGRPVFLFVPSISILEKAASCFKNMNYRTASVHAEDKLRKEKVQQFRDGQFDLLITTTILERGVTVPMVQTG
ILGAESPIFTESALVQIAGRTGRHKEHADGDVIYFHFGKTKSMIEARKHIKIMNELALKNKLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=965033 NSU16_RS17525 WP_339191639.1 3424007..3425401(-) (comFA) [Bacillus sp. FSL K6-1003]
ATGCAGACTAAGACATCAGAATCGAACAGTCTATTCTCTAAAGAACTGCAGCAGCAGCTCCAGAGCCGTCATCTGCTTAG
AACAGAAATCTCATTTTCTGACGAGATCATTGATTGGCATACCGAGCATGGTTATATATCTGCCGAGGAGTCATTATCAA
AAAATAAACGGGGATATAGATGCAATAGATGCGGTCAAAATGATCAACAGTATTTTTCATCGTATCATTCATTTGGAAAA
GATAAAGTTTACTGCCGCTCTTGTGTCATGATGGGCAGGGTGAGTGAGGATGTTTCTTTATATTCTTGGAGTAAGGAGGC
GGAGGCAAACTGGAAGCCTATAAAACTGACTTGGGATGGAAAGCTTTCAAGCGGACAGCAAAAGGCAGCTGCCGTCTTAA
TTGAAGCAATTTCGAAGCAAGAAGAGCTCCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACTGAATTATTATTCCCGGGT
ATAGAATTGGCATTAAATCTAAAACAGCGTGTTTGTATTGCGACCCCGCGCACCGATGTTGTATTAGAGCTTGCTCCGAG
GCTGAAGGCTGCATTTCGAGGTGCTGATATTTCAGCTTTATACGGAGGAAGTGAGGACAAAGGGCGTTTATCTCCGCTTA
TAATTTCCACAACCCATCAGCTTTTGCGTTATAAAGACGCATTCGACGTCATGATCGTTGATGAAGTGGATGCTTTTCCA
TATTCCGCTGATCAAACCCTTCAATTCGCTGTCCAAAAAGCGAGAAAGAAAAACAGCACTCTTGTTTATCTAAGTGCCAC
ACCTCCTAAAGAATTAAAAAGAAAAACGTATAAAGGTGAGTTGAAGTCCGTTCGCATACCGGCCAGATACCATCGGAAGC
CGTTGCCTGAACCGCGCTTTCAATGGTGCGGAAACTGGAAAAAGAAATTAATCCGAAATAAGATCCCAAATGCGGTAAAA
AGATGGATAGAGCAGCATGTAAAAGAAGGAAGGCCCGTTTTTTTATTTGTTCCTTCCATTTCTATACTGGAAAAGGCTGC
TTCTTGTTTTAAAAATATGAATTATCGAACAGCGTCTGTACATGCGGAAGACAAGCTCAGAAAAGAAAAAGTGCAGCAAT
TTCGAGACGGTCAGTTTGATCTGTTAATCACAACAACAATATTAGAAAGAGGTGTCACAGTTCCTATGGTCCAAACAGGC
ATCTTAGGGGCAGAATCGCCCATCTTTACGGAAAGCGCGCTTGTGCAAATCGCGGGAAGGACAGGCCGGCATAAAGAACA
TGCAGACGGTGATGTCATTTATTTTCACTTCGGAAAAACAAAGAGTATGATAGAGGCAAGAAAACATATCAAAATAATGA
ATGAATTGGCTTTGAAAAATAAGTTGATAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(323-424)

Type III restriction enzyme, res subunit (ResIII)

(121-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

84.716

98.707

0.836

Multiple sequence alignment