Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NSU16_RS11995 Genome accession   NZ_CP150176
Coordinates   2366601..2368331 (-) Length   576 a.a.
NCBI ID   WP_339190959.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2361601..2373331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU16_RS11975 (NSU16_11975) - 2361977..2362111 (+) 135 WP_168748207.1 hypothetical protein -
  NSU16_RS11980 (NSU16_11980) - 2362184..2363302 (+) 1119 WP_326217989.1 NADH-dependent flavin oxidoreductase -
  NSU16_RS11985 (NSU16_11985) spo0A 2363884..2364687 (-) 804 WP_010334880.1 sporulation transcription factor Spo0A Regulator
  NSU16_RS11990 (NSU16_11990) spoIVB 2364963..2366240 (-) 1278 WP_168748211.1 SpoIVB peptidase -
  NSU16_RS11995 (NSU16_11995) recN 2366601..2368331 (-) 1731 WP_339190959.1 DNA repair protein RecN Machinery gene
  NSU16_RS12000 (NSU16_12000) argR 2368367..2368816 (-) 450 WP_010334883.1 arginine repressor ArgR -
  NSU16_RS12005 (NSU16_12005) - 2368913..2369758 (-) 846 WP_168748214.1 TlyA family RNA methyltransferase -
  NSU16_RS12010 (NSU16_12010) dxs 2369755..2371656 (-) 1902 WP_010334885.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NSU16_RS12015 (NSU16_12015) - 2371835..2372725 (-) 891 WP_010334886.1 polyprenyl synthetase family protein -
  NSU16_RS12020 (NSU16_12020) - 2372715..2372969 (-) 255 WP_010334887.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64643.37 Da        Isoelectric Point: 4.6781

>NTDB_id=965002 NSU16_RS11995 WP_339190959.1 2366601..2368331(-) (recN) [Bacillus sp. FSL K6-1003]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGETKAELEGLFQLDSGHPVFDVC
AEQGIDVSDEMIVMRRDISTNGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALQ
AYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIFESLQNAYNALRSE
QGGLDWVGMASSQLEDLSDINEPLQKLSESVSNSYYLLEDATFQMRNMLDELEYDPERLNFIEARLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKQELDSVGKDVAVEVANVSRIRKTWAKKLADEIHRELKSLYMEKSTFDTEFKV
RTATRGEEAPVVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSMGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLTKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=965002 NSU16_RS11995 WP_339190959.1 2366601..2368331(-) (recN) [Bacillus sp. FSL K6-1003]
TTGTTAGCTGAATTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGATGCCATTTCACTTTTAGTCGGTGGCCGCGGCTCATCTGAAT
TTGTCAGGTATGGAGAAACAAAAGCCGAGCTTGAAGGGCTGTTTCAGTTAGACAGCGGCCATCCCGTTTTTGACGTTTGT
GCTGAACAGGGGATTGACGTTTCAGATGAAATGATCGTCATGAGAAGGGATATCAGCACGAACGGAAAAAGCGTATGCCG
GGTAAATGGCAAACTTGTAACGATTGCGTCGCTAAGAGAAATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAGGACGAAAATCATCTTCAGCTATTGGACAAGTTTGCGGGAGCCGAAGTGGAAAGCGCACTTCAA
GCATATCAGGAAGGTTATCAGCGCTACATGAAGCTGCTTAAAAAGTTGAAGCAGCTTTCTGAAAGTGAGCAGGAAATGGC
GCACCGGCTTGATCTGATTCAATTTCAGCTGGAAGAAATTGAATCAGCAAAACTCGAACTGAACGAAGATGAGCAGTTGC
AAGAAGAGCGTCAGCAAATTTCAAATTTTGAGAAAATATTTGAATCACTGCAAAATGCTTATAATGCGCTGCGCAGCGAG
CAGGGCGGTCTGGACTGGGTCGGAATGGCGTCGTCTCAGCTTGAAGATTTATCCGATATTAACGAACCGCTGCAAAAACT
GTCTGAGAGTGTTTCGAACTCCTACTATCTTTTGGAGGACGCTACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
ATGACCCGGAACGATTGAATTTTATTGAGGCGCGTCTTAATGAGATTAAGCAGCTAAAGCGGAAATACGGGGCAACCGTT
GAGGATATTTTAGAATATGCTTCTAAAATTGAAGAAGAGATTGATCAAATTGAAAACAGAGACAGCCATCTTCAGAGCCT
GAAGCAGGAGCTGGATTCGGTTGGTAAAGATGTTGCAGTAGAAGTGGCAAACGTTTCCCGAATCCGAAAAACATGGGCGA
AAAAGCTGGCTGACGAAATCCATCGTGAACTGAAAAGCTTATATATGGAAAAGTCGACTTTCGATACGGAGTTTAAGGTC
AGAACAGCAACCCGCGGTGAGGAAGCGCCGGTTGTAAACGGGCAGCCTGTTCAGCTCACTGAACAAGGGATTGATCTGGT
GAAGTTTTTGATTTCTACCAATACGGGGGAGCCGCTGAAATCTCTTTCTAAAGTTGCTTCCGGCGGAGAGCTGTCAAGGG
TCATGCTTGCCATTAAAAGCATTTTTTCCTCACAGCAGGACGTTACCTCGATTATATTTGACGAGGTAGATACAGGCGTA
AGCGGCAGGGTCGCTCAGGCTATTGCTGAAAAGATTCACAAAGTATCAATGGGATCACAAGTGCTTTGCATTACGCACCT
GCCTCAGGTGGCAGCCATGGCCGATACCCATCTTTACATTGCGAAAGAATTAAAAGACGGAAGAACGACGACGCGTGTAA
AGCCGCTGACTAAACAAGAGAAGGTGGCGGAAATCGGGCGCATGATAGCAGGAGTCGAAGTCACAGATCTAACAAAACGC
CATGCGAAAGAGCTGTTAAAACAAGCGGATCAAGTCAAAACAACTGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

95.66

100

0.957

Multiple sequence alignment