Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NSU16_RS11000 Genome accession   NZ_CP150176
Coordinates   2187513..2188133 (+) Length   206 a.a.
NCBI ID   WP_010334705.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1003     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2182513..2193133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU16_RS10960 (NSU16_10960) - 2183651..2184157 (-) 507 WP_029441333.1 PTS glucose transporter subunit IIA -
  NSU16_RS10965 (NSU16_10965) - 2184294..2184713 (+) 420 WP_326192647.1 Hsp20/alpha crystallin family protein -
  NSU16_RS10970 (NSU16_10970) - 2184734..2185108 (-) 375 WP_268446005.1 YppG family protein -
  NSU16_RS10975 (NSU16_10975) - 2185296..2185484 (+) 189 WP_010334700.1 YppF family protein -
  NSU16_RS10980 (NSU16_10980) - 2185520..2185891 (-) 372 WP_229147113.1 YppE family protein -
  NSU16_RS10985 (NSU16_10985) - 2185937..2186182 (-) 246 WP_268446004.1 DUF5446 family protein -
  NSU16_RS10990 (NSU16_10990) sspM 2186380..2186484 (+) 105 WP_010334703.1 acid-soluble spore protein SspM -
  NSU16_RS10995 (NSU16_10995) - 2186510..2187472 (-) 963 WP_339190820.1 DUF2515 domain-containing protein -
  NSU16_RS11000 (NSU16_11000) recU 2187513..2188133 (+) 621 WP_010334705.1 Holliday junction resolvase RecU Machinery gene
  NSU16_RS11005 (NSU16_11005) - 2188155..2190902 (+) 2748 WP_339190823.1 PBP1A family penicillin-binding protein -
  NSU16_RS11010 (NSU16_11010) - 2190976..2191470 (-) 495 WP_339190827.1 YpoC family protein -
  NSU16_RS11015 (NSU16_11015) nth 2191467..2192126 (-) 660 WP_010334708.1 endonuclease III -
  NSU16_RS11020 (NSU16_11020) dnaD 2192145..2192843 (-) 699 WP_168748110.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23880.98 Da        Isoelectric Point: 9.5290

>NTDB_id=965000 NSU16_RS11000 WP_010334705.1 2187513..2188133(+) (recU) [Bacillus sp. FSL K6-1003]
MIRYPNGKTFQPKHPVSSQSSHKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNTTSFPLQNFHDHQIEHMKQVTAQDGICFVIISAFGQVYFLEADRLFYFWERKE
KNGRKSIRKDELEEAAYPISLGYAPRIDYISIIEQLYFSPSSSAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=965000 NSU16_RS11000 WP_010334705.1 2187513..2188133(+) (recU) [Bacillus sp. FSL K6-1003]
GTGATTCGGTATCCTAACGGAAAAACGTTTCAGCCGAAACATCCGGTTTCATCCCAAAGCAGTCATAAAAGAGCGCCATC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTGA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCTGCAGTCATAAAAGAAGCCTAT
TTTAAGCAATCATCGACAACAGATTATAACGGAATTTATAAAGGGCGGTACATTGACTTTGAGGCGAAAGAGACAAAAAA
CACAACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATTGAGCATATGAAGCAGGTAACGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGGCCAGGTTTATTTTTTAGAAGCTGATAGGCTGTTTTATTTCTGGGAAAGAAAAGAA
AAAAATGGCAGAAAATCCATTCGAAAAGATGAGTTAGAGGAAGCAGCTTATCCGATTTCTCTTGGATACGCGCCAAGAAT
TGATTATATTAGTATTATTGAGCAGCTTTATTTTTCGCCATCATCAAGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

95.146

100

0.951

Multiple sequence alignment