Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NSU16_RS02240 Genome accession   NZ_CP150176
Coordinates   442038..442988 (+) Length   316 a.a.
NCBI ID   WP_010333025.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1003     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 437038..447988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU16_RS02215 (NSU16_02215) rapC 438476..439624 (+) 1149 WP_168746930.1 response regulator aspartate phosphatase RapC Regulator
  NSU16_RS02220 (NSU16_02220) phrC 439608..439730 (+) 123 WP_010333023.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  NSU16_RS02225 (NSU16_02225) - 439835..439927 (-) 93 WP_026014660.1 YjcZ family sporulation protein -
  NSU16_RS02230 (NSU16_02230) - 440085..440168 (-) 84 Protein_396 sporulation protein YjcZ -
  NSU16_RS02235 (NSU16_02235) - 440288..441652 (-) 1365 WP_168746931.1 aspartate kinase -
  NSU16_RS02240 (NSU16_02240) ceuB 442038..442988 (+) 951 WP_010333025.1 petrobactin ABC transporter permease YclN Machinery gene
  NSU16_RS02245 (NSU16_02245) yclO 442981..443928 (+) 948 WP_010333026.1 petrobactin ABC transporter permease YclO -
  NSU16_RS02250 (NSU16_02250) yclP 443922..444680 (+) 759 WP_268444292.1 petrobactin ABC transporter ATP-binding protein YclP -
  NSU16_RS02255 (NSU16_02255) - 444702..445655 (+) 954 WP_339191954.1 siderophore ABC transporter substrate-binding protein -
  NSU16_RS02260 (NSU16_02260) - 445705..447123 (-) 1419 WP_010333029.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35011.45 Da        Isoelectric Point: 9.8262

>NTDB_id=964973 NSU16_RS02240 WP_010333025.1 442038..442988(+) (ceuB) [Bacillus sp. FSL K6-1003]
MKLRYLFFLLIILAVTSVFIGVEDLSPLDLFDLSKEEASTLFASRLPRLISILIAGMSMSICGLIMQQITRNKFVSPTTA
GTMDWARLGILISLLLFTSASPLMKMLIAFVFALVGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKNSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=964973 NSU16_RS02240 WP_010333025.1 442038..442988(+) (ceuB) [Bacillus sp. FSL K6-1003]
ATGAAGTTACGTTACTTATTTTTTCTACTTATCATACTAGCAGTCACTTCTGTATTTATCGGCGTAGAAGATCTGTCGCC
GCTTGATCTCTTCGATCTAAGCAAAGAAGAGGCATCAACGCTCTTTGCCAGCCGTTTGCCGCGGCTGATCAGCATTTTAA
TCGCAGGGATGAGCATGAGCATCTGCGGCCTGATTATGCAGCAGATCACCAGAAACAAATTCGTGTCACCGACAACGGCC
GGCACGATGGACTGGGCGAGGCTGGGAATCTTAATATCCTTGCTTCTGTTTACATCGGCAAGTCCATTAATGAAAATGCT
GATTGCTTTTGTCTTTGCTTTAGTCGGTAATTTTCTGTTTATGAAAATTCTTGAAAGAATTAAGTTTAACGACACCATCT
TTATTCCGCTTGTCGGTTTAATGCTCGGGAATATCGTCAGCTCAATCGCGACGTTTATCGCGTATAAATATGACTTGATC
CAAAACGTGTCATCATGGCTTCAGGGAGATTTCTCCTTAGTTGTGAAAGGGAGATACGAGCTTCTCTATCTGAGTATTCC
GCTTGTCATCATTGCCTATGTTTATGCGGATAAATTTACAGTGGCGGGTATGGGAGAAAGCTTTTCTGTCAACCTCGGCC
TCAAGTATAAACGGGTTGTGAACATCGGGCTCATTATCGTATCCCTGATTACGTCACTTGTCATTTTGACTGTCGGTATG
CTTCCGTTTCTCGGTTTAATCATCCCGAACATTGTATCGATTTACAGAGGAGACAACCTGAAAAACAGCCTGCCGCACAC
TGCGCTGCTGGGAGCGGTTTTTGTTCTGTTTTGCGATATATTGGGCAGAGTCATTATCTTCCCTTATGAAATCTCGATTG
GTCTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCGTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

100

0.538

Multiple sequence alignment