Detailed information NTG0964973

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACJ63U_RS05640
• Genome accession: NZ_CP174453
• Coordinates: 1170504..1171496 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O25b:H4-ST131 strain MB1341
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1165504..1176496

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACJ63U_RS05610 (ACJ63U_05610)	ispD	1165565..1166275 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACJ63U_RS05615 (ACJ63U_05615)	ispF	1166275..1166754 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACJ63U_RS05620 (ACJ63U_05620)	truD	1166751..1167800 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
ACJ63U_RS05625 (ACJ63U_05625)	surE	1167781..1168542 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACJ63U_RS05630 (ACJ63U_05630)	pcm	1168536..1169162 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACJ63U_RS05635 (ACJ63U_05635)	nlpD	1169347..1170441 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
ACJ63U_RS05640 (ACJ63U_05640)	rpoS	1170504..1171496 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACJ63U_RS05645 (ACJ63U_05645)	-	1171667..1172218 (-)	552	WP_001179444.1	flavodoxin family protein	-
ACJ63U_RS05650 (ACJ63U_05650)	-	1172443..1173486 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
ACJ63U_RS05655 (ACJ63U_05655)	ygbN	1173629..1174993 (-)	1365	WP_000104433.1	GntP family transporter	-
ACJ63U_RS05660 (ACJ63U_05660)	ygbM	1175082..1175858 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=964973 ACJ63U_RS05640 WP_000081550.1 1170504..1171496(+) (rpoS) [Escherichia coli O25b:H4-ST131 strain MB1341]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=964973 ACJ63U_RS05640 WP_000081550.1 1170504..1171496(+) (rpoS) [Escherichia coli O25b:H4-ST131 strain MB1341]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715