Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NSU16_RS02025 Genome accession   NZ_CP150176
Coordinates   379972..380409 (-) Length   145 a.a.
NCBI ID   WP_010332985.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1003     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 374972..385409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU16_RS01985 (NSU16_01985) - 375391..375492 (+) 102 Protein_347 formaldehyde dehydrogenase -
  NSU16_RS01990 (NSU16_01990) - 375505..375960 (+) 456 WP_010332978.1 RDD family protein -
  NSU16_RS01995 (NSU16_01995) - 376041..376376 (+) 336 WP_339191940.1 YckD family protein -
  NSU16_RS02000 (NSU16_02000) - 376512..376931 (+) 420 WP_024120173.1 MarR family transcriptional regulator -
  NSU16_RS02005 (NSU16_02005) - 376922..377260 (+) 339 WP_326226486.1 DUF3147 family protein -
  NSU16_RS02010 (NSU16_02010) - 377277..378005 (+) 729 WP_326130557.1 AAA family ATPase -
  NSU16_RS02015 (NSU16_02015) - 378078..379511 (+) 1434 WP_339191941.1 family 1 glycosylhydrolase -
  NSU16_RS02020 (NSU16_02020) nin/comJ 379547..379945 (-) 399 WP_010332984.1 competence protein ComJ Regulator
  NSU16_RS02025 (NSU16_02025) nucA/comI 379972..380409 (-) 438 WP_010332985.1 DNA-entry nuclease Machinery gene
  NSU16_RS02030 (NSU16_02030) tlpC 380596..382320 (-) 1725 WP_339192631.1 methyl-accepting chemotaxis protein TlpC -
  NSU16_RS02035 (NSU16_02035) hxlB 382435..382992 (-) 558 WP_010332987.1 6-phospho-3-hexuloisomerase -
  NSU16_RS02040 (NSU16_02040) hxlA 382998..383630 (-) 633 WP_010332988.1 3-hexulose-6-phosphate synthase -
  NSU16_RS02045 (NSU16_02045) hxlR 383860..384222 (+) 363 WP_003241118.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15987.71 Da        Isoelectric Point: 4.2036

>NTDB_id=964969 NSU16_RS02025 WP_010332985.1 379972..380409(-) (nucA/comI) [Bacillus sp. FSL K6-1003]
MDIIKTLLLVIVVIAAAAVGLIKGDFFSDEQKTSQTEEYDETIAFPSERYPETANHIKDAISEGHSDVCTVDRDGAEERR
EQSLKDVPTKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=964969 NSU16_RS02025 WP_010332985.1 379972..380409(-) (nucA/comI) [Bacillus sp. FSL K6-1003]
ATGGACATTATAAAAACTTTACTTCTCGTAATAGTTGTCATAGCAGCTGCAGCTGTTGGCCTGATTAAGGGAGACTTTTT
CTCAGACGAACAAAAAACGTCTCAAACAGAAGAATATGACGAAACAATAGCCTTCCCTTCTGAGCGTTATCCTGAGACAG
CAAATCATATCAAGGACGCAATAAGTGAGGGGCATTCAGATGTGTGCACTGTAGACAGAGACGGAGCTGAGGAACGCCGC
GAACAATCATTGAAAGACGTACCTACCAAAACAGGGTATGACCGAGATGAATGGCCAATGGCCATGTGCAAAGAAGGCGG
TGAAGGGGCTTCTGTAGAATATATTTCTCCCGCTGACAATCGCGGCGCAGGCTCCTGGGTCGGGCATCAGCTGACCGATT
ACCCTGATGGCACAAAGGTTTTATTTACGATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

90.278

99.31

0.897

Multiple sequence alignment