Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   NSU16_RS02020 Genome accession   NZ_CP150176
Coordinates   379547..379945 (-) Length   132 a.a.
NCBI ID   WP_010332984.1    Uniprot ID   A0AAP3CN78
Organism   Bacillus sp. FSL K6-1003     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 374547..384945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU16_RS01985 (NSU16_01985) - 375391..375492 (+) 102 Protein_347 formaldehyde dehydrogenase -
  NSU16_RS01990 (NSU16_01990) - 375505..375960 (+) 456 WP_010332978.1 RDD family protein -
  NSU16_RS01995 (NSU16_01995) - 376041..376376 (+) 336 WP_339191940.1 YckD family protein -
  NSU16_RS02000 (NSU16_02000) - 376512..376931 (+) 420 WP_024120173.1 MarR family transcriptional regulator -
  NSU16_RS02005 (NSU16_02005) - 376922..377260 (+) 339 WP_326226486.1 DUF3147 family protein -
  NSU16_RS02010 (NSU16_02010) - 377277..378005 (+) 729 WP_326130557.1 AAA family ATPase -
  NSU16_RS02015 (NSU16_02015) - 378078..379511 (+) 1434 WP_339191941.1 family 1 glycosylhydrolase -
  NSU16_RS02020 (NSU16_02020) nin/comJ 379547..379945 (-) 399 WP_010332984.1 competence protein ComJ Regulator
  NSU16_RS02025 (NSU16_02025) nucA/comI 379972..380409 (-) 438 WP_010332985.1 DNA-entry nuclease Machinery gene
  NSU16_RS02030 (NSU16_02030) tlpC 380596..382320 (-) 1725 WP_339192631.1 methyl-accepting chemotaxis protein TlpC -
  NSU16_RS02035 (NSU16_02035) hxlB 382435..382992 (-) 558 WP_010332987.1 6-phospho-3-hexuloisomerase -
  NSU16_RS02040 (NSU16_02040) hxlA 382998..383630 (-) 633 WP_010332988.1 3-hexulose-6-phosphate synthase -
  NSU16_RS02045 (NSU16_02045) hxlR 383860..384222 (+) 363 WP_003241118.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14957.87 Da        Isoelectric Point: 4.6034

>NTDB_id=964968 NSU16_RS02020 WP_010332984.1 379547..379945(-) (nin/comJ) [Bacillus sp. FSL K6-1003]
MIKSWKPQELTISYHQFTVFQKGSAPPVIDWTDEAIEKGYAEADEAISFEAQRNSKVYILLRLNSSETVASYEKKVTVPF
HVTKDGIEIESIMSKRLSFDLPNGNYQFTCYTVPAELSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=964968 NSU16_RS02020 WP_010332984.1 379547..379945(-) (nin/comJ) [Bacillus sp. FSL K6-1003]
TTGATCAAATCATGGAAGCCGCAAGAACTGACGATTTCATATCATCAATTTACTGTATTTCAAAAGGGTTCCGCACCGCC
TGTCATCGATTGGACAGATGAAGCGATTGAAAAAGGATATGCGGAAGCGGACGAAGCCATTTCGTTTGAGGCACAGCGAA
ATTCAAAGGTATATATACTTTTGCGCCTTAACAGTTCAGAAACAGTAGCATCCTATGAAAAAAAAGTGACTGTTCCTTTT
CACGTCACAAAAGACGGAATTGAAATTGAAAGCATCATGTCCAAAAGGCTCTCCTTTGACCTGCCTAATGGGAACTATCA
ATTCACATGCTACACTGTACCGGCTGAGCTGTCAGATCTGCATGCTGACACTTACATCATTGATGCTGTTTCCGTCTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

85.606

100

0.856

Multiple sequence alignment