Detailed information NTG0964630

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACI77Q_RS16840
• Genome accession: NZ_CP174267
• Coordinates: 3428765..3429757 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081586.1
• Uniprot ID: Q540P1
• Organism: Escherichia coli str. K-12 substr. MG1655 strain K-12 isolate original strain
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3423765..3434757

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI77Q_RS16820 (ACI77Q_16820)	otnK	3424541..3425707 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
ACI77Q_RS16825 (ACI77Q_16825)	ygbL	3425799..3426437 (+)	639	WP_001278994.1	aldolase	-
ACI77Q_RS16830 (ACI77Q_16830)	ygbM	3426442..3427218 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ACI77Q_RS16835 (ACI77Q_16835)	ygbN	3427307..3428671 (+)	1365	WP_000104441.1	GntP family transporter	-
ACI77Q_RS16840 (ACI77Q_16840)	rpoS	3428765..3429757 (-)	993	WP_000081586.1	RNA polymerase sigma factor RpoS	Regulator
ACI77Q_RS16845 (ACI77Q_16845)	nlpD	3429820..3430914 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACI77Q_RS16850 (ACI77Q_16850)	pcm	3431099..3431725 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACI77Q_RS16855 (ACI77Q_16855)	surE	3431719..3432480 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACI77Q_RS16860 (ACI77Q_16860)	truD	3432461..3433510 (-)	1050	WP_000568970.1	tRNA pseudouridine(13) synthase TruD	-
ACI77Q_RS16865 (ACI77Q_16865)	ispF	3433507..3433986 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACI77Q_RS16870 (ACI77Q_16870)	ispD	3433986..3434696 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37956.89 Da
• Isoelectric Point: 4.5886

>NTDB_id=964630 ACI77Q_RS16840 WP_000081586.1 3428765..3429757(-) (rpoS) [Escherichia coli str. K-12 substr. MG1655 strain K-12 isolate original strain]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVELEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=964630 ACI77Q_RS16840 WP_000081586.1 3428765..3429757(-) (rpoS) [Escherichia coli str. K-12 substr. MG1655 strain K-12 isolate original strain]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACTGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: Q540P1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715