Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NSU02_RS19470 Genome accession   NZ_CP150165
Coordinates   4049535..4050071 (+) Length   178 a.a.
NCBI ID   WP_339193696.1    Uniprot ID   -
Organism   Aeribacillus sp. FSL W8-0870     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4033102..4050446 4049535..4050071 within 0
IScluster/Tn 4039788..4052205 4049535..4050071 within 0


Gene organization within MGE regions


Location: 4033102..4052205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU02_RS19395 (NSU02_19395) - 4033102..4034331 (-) 1230 WP_027725928.1 IS110 family transposase -
  NSU02_RS19400 (NSU02_19400) helD 4034764..4037106 (+) 2343 WP_339193686.1 RNA polymerase recycling motor HelD -
  NSU02_RS19405 (NSU02_19405) - 4037394..4037615 (-) 222 Protein_3774 ABC transporter permease -
  NSU02_RS19410 (NSU02_19410) - 4037743..4038690 (-) 948 WP_117017577.1 L-lactate dehydrogenase -
  NSU02_RS19415 (NSU02_19415) - 4038722..4038871 (-) 150 WP_339193687.1 L-lactate permease -
  NSU02_RS19420 (NSU02_19420) - 4038986..4039432 (-) 447 WP_339193688.1 L-lactate permease -
  NSU02_RS19425 (NSU02_19425) - 4039788..4040666 (+) 879 WP_327848482.1 IS982 family transposase -
  NSU02_RS19430 (NSU02_19430) - 4040952..4041380 (-) 429 WP_339193689.1 hypothetical protein -
  NSU02_RS19435 (NSU02_19435) - 4041430..4041612 (-) 183 WP_144598567.1 hypothetical protein -
  NSU02_RS19440 (NSU02_19440) - 4042298..4043066 (+) 769 Protein_3781 NERD domain-containing protein -
  NSU02_RS19445 (NSU02_19445) - 4043524..4044752 (+) 1229 Protein_3782 IS256 family transposase -
  NSU02_RS19450 (NSU02_19450) - 4045042..4046586 (-) 1545 WP_339193690.1 IS1182 family transposase -
  NSU02_RS19455 (NSU02_19455) - 4046615..4046917 (+) 303 WP_339193692.1 metalloregulator ArsR/SmtB family transcription factor -
  NSU02_RS19460 (NSU02_19460) - 4047130..4048314 (+) 1185 WP_339193694.1 MFS transporter -
  NSU02_RS19465 (NSU02_19465) - 4049025..4049552 (-) 528 Protein_3786 substrate-binding domain-containing protein -
  NSU02_RS19470 (NSU02_19470) ssbA 4049535..4050071 (+) 537 WP_339193696.1 single-stranded DNA-binding protein Machinery gene
  NSU02_RS19475 (NSU02_19475) - 4050273..4050446 (+) 174 WP_015256826.1 hypothetical protein -
  NSU02_RS19480 (NSU02_19480) - 4050610..4052205 (-) 1596 WP_151682006.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19199.95 Da        Isoelectric Point: 5.2783

>NTDB_id=964489 NSU02_RS19470 WP_339193696.1 4049535..4050071(+) (ssbA) [Aeribacillus sp. FSL W8-0870]
MYARLILIGRLTRDPELRYTPSGVGVCTFTLAVDRPFTNQQGDREADFIPIVVWRQLAETCANYLRKGRLVAVEGRIQVR
SYTPEGSDQRRYVTEVVAENVRFLESANSGSGNNGNGNGGQGGGGNQGSGRGGQTGGGRNQRGGRSDDHPGAGGHDPGYD
PFWDDGRPIDISDDDLPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=964489 NSU02_RS19470 WP_339193696.1 4049535..4050071(+) (ssbA) [Aeribacillus sp. FSL W8-0870]
GTGTACGCCCGCCTGATATTGATCGGGCGCCTCACACGCGATCCCGAGTTGCGTTATACCCCGTCCGGAGTTGGCGTTTG
TACGTTTACCTTGGCTGTCGACCGCCCCTTTACCAACCAACAAGGCGATCGCGAAGCGGATTTCATTCCCATCGTCGTTT
GGCGTCAGCTCGCCGAAACGTGTGCGAATTATCTGCGAAAAGGCCGACTGGTTGCTGTTGAAGGACGCATCCAGGTGCGT
AGCTATACGCCGGAAGGTTCTGATCAACGACGGTACGTAACGGAAGTTGTCGCCGAAAACGTGCGATTCCTGGAGTCCGC
GAATTCCGGTTCCGGCAATAATGGAAACGGTAATGGTGGACAAGGTGGCGGCGGAAACCAGGGAAGTGGCCGCGGCGGTC
AAACCGGTGGTGGACGCAACCAACGTGGAGGACGCAGCGATGATCATCCTGGAGCTGGAGGGCATGACCCTGGTTACGAT
CCGTTCTGGGATGACGGCCGACCGATCGATATTTCGGATGACGACTTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.247

100

0.522
  ssb Latilactobacillus sakei subsp. sakei 23K

48.876

100

0.489

Multiple sequence alignment