Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NSU02_RS04910 Genome accession   NZ_CP150165
Coordinates   1018985..1019623 (+) Length   212 a.a.
NCBI ID   WP_066249242.1    Uniprot ID   -
Organism   Aeribacillus sp. FSL W8-0870     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1013985..1024623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU02_RS04875 (NSU02_04875) - 1014050..1014268 (+) 219 WP_063387068.1 spore germination protein -
  NSU02_RS04880 (NSU02_04880) - 1014348..1014596 (+) 249 WP_327873263.1 YueH family protein -
  NSU02_RS04885 (NSU02_04885) - 1014646..1014885 (-) 240 WP_232515690.1 helix-turn-helix transcriptional regulator -
  NSU02_RS04890 (NSU02_04890) - 1015225..1015365 (+) 141 WP_063387066.1 DegQ family regulator -
  NSU02_RS04895 (NSU02_04895) - 1015483..1016415 (+) 933 WP_339194508.1 polyprenyl synthetase family protein -
  NSU02_RS04900 (NSU02_04900) comX 1016432..1016593 (+) 162 WP_082830253.1 competence pheromone ComX -
  NSU02_RS04905 (NSU02_04905) - 1016621..1018918 (+) 2298 WP_339194512.1 histidine kinase -
  NSU02_RS04910 (NSU02_04910) comA 1018985..1019623 (+) 639 WP_066249242.1 response regulator transcription factor Regulator
  NSU02_RS04915 (NSU02_04915) mnhG 1019666..1020031 (-) 366 WP_063387064.1 monovalent cation/H(+) antiporter subunit G -
  NSU02_RS04920 (NSU02_04920) - 1020012..1020299 (-) 288 WP_066249245.1 Na(+)/H(+) antiporter subunit F1 -
  NSU02_RS04925 (NSU02_04925) - 1020299..1020775 (-) 477 WP_339194515.1 Na+/H+ antiporter subunit E -
  NSU02_RS04930 (NSU02_04930) - 1020781..1022265 (-) 1485 WP_339194516.1 Na+/H+ antiporter subunit D -
  NSU02_RS04935 (NSU02_04935) - 1022262..1022600 (-) 339 WP_066249252.1 Na(+)/H(+) antiporter subunit C -
  NSU02_RS04940 (NSU02_04940) - 1022600..1023037 (-) 438 WP_130157063.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24058.80 Da        Isoelectric Point: 4.9222

>NTDB_id=964456 NSU02_RS04910 WP_066249242.1 1018985..1019623(+) (comA) [Aeribacillus sp. FSL W8-0870]
MIRILVIDDHPAVREGTKAILETDSEVEVDCLEPPYTAELMKKIDFLQYDAVLMDMNLGDVNGIELAKQITSQEHQCKVL
LYTGYDVNDYMEEAISLGIHGVISKTESKEKILSHIRHALLGEIILSFDYVKKLIERQTLKSPSMKEANEPLTDREKMIL
MEVERGLTNQEIADKLHLSKRSIEYSLTSIFNKLHVSSRTEAVLIAKSEGIL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=964456 NSU02_RS04910 WP_066249242.1 1018985..1019623(+) (comA) [Aeribacillus sp. FSL W8-0870]
ATGATTCGTATTTTAGTGATTGACGATCATCCTGCTGTGAGAGAAGGGACAAAAGCGATATTGGAAACGGATTCTGAAGT
TGAAGTGGATTGTCTGGAGCCTCCTTATACGGCTGAACTTATGAAGAAAATCGATTTTTTGCAATATGATGCAGTTCTTA
TGGATATGAATTTAGGTGACGTCAACGGGATTGAACTGGCAAAGCAAATAACATCCCAAGAACACCAATGCAAAGTCCTT
CTTTATACTGGATATGATGTCAATGATTATATGGAAGAAGCGATTTCCTTAGGCATTCATGGAGTAATCAGCAAGACGGA
GTCAAAAGAGAAAATATTATCTCACATTCGCCATGCGTTGCTTGGTGAGATTATTCTATCATTTGATTACGTAAAAAAAT
TGATTGAACGACAGACATTAAAGTCGCCATCTATGAAAGAAGCAAATGAGCCTTTAACAGATAGGGAAAAAATGATTTTA
ATGGAAGTCGAAAGAGGGTTAACAAATCAAGAAATAGCAGATAAGCTGCATTTAAGCAAAAGATCGATTGAATATAGTCT
GACTTCCATTTTTAATAAGCTGCACGTCAGCTCTCGGACAGAAGCCGTATTAATTGCGAAGTCAGAAGGCATTCTTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

63.084

100

0.637

Multiple sequence alignment