Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NSU02_RS03375 Genome accession   NZ_CP150165
Coordinates   679871..681247 (+) Length   458 a.a.
NCBI ID   WP_339194222.1    Uniprot ID   -
Organism   Aeribacillus sp. FSL W8-0870     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 674871..686247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU02_RS03355 (NSU02_03355) - 675320..675958 (-) 639 WP_339194220.1 YigZ family protein -
  NSU02_RS03360 (NSU02_03360) - 676131..677288 (+) 1158 WP_339194221.1 histidine kinase -
  NSU02_RS03365 (NSU02_03365) - 677357..678034 (+) 678 WP_063386301.1 response regulator transcription factor -
  NSU02_RS03370 (NSU02_03370) - 678730..679569 (+) 840 WP_066247016.1 DegV family protein -
  NSU02_RS03375 (NSU02_03375) comFA 679871..681247 (+) 1377 WP_339194222.1 DEAD/DEAH box helicase Machinery gene
  NSU02_RS03380 (NSU02_03380) - 681386..681661 (+) 276 WP_063386299.1 competence protein ComFB -
  NSU02_RS03385 (NSU02_03385) - 681661..682359 (+) 699 WP_339194223.1 ComF family protein -
  NSU02_RS03390 (NSU02_03390) - 682425..682847 (+) 423 WP_339194224.1 TIGR03826 family flagellar region protein -
  NSU02_RS03395 (NSU02_03395) flgM 682938..683207 (+) 270 WP_063386297.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSU02_RS03400 (NSU02_03400) - 683448..683927 (+) 480 WP_339194225.1 flagellar protein FlgN -
  NSU02_RS03405 (NSU02_03405) flgK 683942..685447 (+) 1506 WP_339194226.1 flagellar hook-associated protein FlgK -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 51540.73 Da        Isoelectric Point: 9.2207

>NTDB_id=964454 NSU02_RS03375 WP_339194222.1 679871..681247(+) (comFA) [Aeribacillus sp. FSL W8-0870]
MHDHDLQKHLLGRHLLSNELPFSMDAVQNAPFVEIEQGVVKKSGIFYCNRCGNDQPFLFAGFDCARCKKFCHYCRNCIMM
GRVSECSKLVSFPRRDKEEKHSIQSDQTNFLQWDGELSPAQKRASDRIAESVLQRTDCLIWAVCGAGKTEVLFAGINTAL
QKGLFVCIAAPRTDVVLELGPRLKNVFPSIDVAVLYGGSEDRLKLSPITISTTHQLLRYKEAFDVVILDEVDAFPYSVDP
ALQFAVEKARKRNSSLIYLTATPSSAIKRHFKPSEIVKIPARYHGYPLPVPEFKWCGNWKKRLEKGKLPKNIITWAAEQM
QKERQAFLFVPEIKVLHDVVPLLKKLNSAVEGVHAEDPQRKEKVRAFRNGRIPIIVTTTILERGVTVPGTDAAVLGAEET
IFTESALVQISGRVGRSMNNPTGSVIFFHYGKTNEMIAAKHHILAMNREAAKEDLLKR

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=964454 NSU02_RS03375 WP_339194222.1 679871..681247(+) (comFA) [Aeribacillus sp. FSL W8-0870]
ATGCATGATCATGATCTTCAAAAACATCTTCTCGGAAGACATCTCCTTTCAAATGAGCTCCCGTTTTCAATGGATGCCGT
TCAAAATGCCCCCTTCGTTGAAATAGAACAAGGTGTTGTGAAAAAATCCGGTATTTTTTATTGCAATCGATGTGGAAATG
ATCAACCCTTTTTATTTGCAGGCTTTGACTGTGCAAGGTGCAAAAAGTTTTGTCATTATTGCCGGAACTGTATCATGATG
GGGCGAGTAAGTGAATGTTCAAAGCTTGTTAGTTTTCCAAGACGAGATAAGGAGGAAAAACATTCGATCCAATCGGATCA
AACAAACTTTTTGCAATGGGATGGCGAGCTGTCTCCGGCGCAAAAAAGAGCATCTGACCGGATCGCGGAGTCCGTTTTGC
AGCGTACAGACTGTCTCATTTGGGCAGTTTGCGGAGCAGGAAAAACAGAGGTGCTGTTTGCCGGCATAAACACAGCTTTG
CAGAAAGGGCTATTTGTTTGCATTGCTGCACCGCGTACGGATGTTGTTTTGGAGCTTGGACCGCGTTTGAAAAACGTTTT
TCCGAGCATCGATGTGGCAGTGCTTTACGGAGGAAGCGAAGATCGTTTGAAGTTGAGCCCAATTACCATTTCAACGACTC
ATCAGCTTCTTCGGTATAAAGAAGCCTTTGACGTGGTGATACTTGACGAAGTGGATGCTTTTCCATATTCTGTAGATCCT
GCTTTGCAATTTGCGGTTGAAAAAGCACGCAAACGAAACAGTTCCCTTATTTATTTAACTGCGACTCCCTCCTCAGCAAT
TAAGCGGCATTTTAAGCCTTCCGAAATTGTGAAAATCCCTGCTCGATACCATGGTTATCCCCTACCTGTTCCTGAATTCA
AATGGTGCGGCAATTGGAAAAAAAGATTGGAGAAAGGAAAGCTGCCGAAAAATATCATCACATGGGCAGCCGAACAAATG
CAAAAGGAAAGACAAGCTTTTCTATTTGTACCGGAAATCAAAGTGCTTCATGATGTCGTTCCGTTACTAAAAAAATTGAA
TTCAGCGGTTGAAGGAGTACATGCCGAAGATCCCCAAAGAAAAGAAAAGGTTCGGGCATTTCGAAATGGCCGGATTCCGA
TCATTGTCACAACTACCATTTTGGAAAGGGGTGTAACAGTTCCTGGAACTGATGCAGCTGTTTTAGGAGCAGAAGAAACC
ATTTTTACAGAAAGTGCCCTTGTTCAAATATCCGGCCGTGTTGGACGGAGCATGAACAATCCAACAGGCTCCGTTATCTT
TTTCCATTATGGCAAAACAAATGAAATGATTGCAGCGAAACACCATATTCTTGCTATGAATCGGGAAGCGGCAAAGGAAG
ATTTGTTAAAGCGTTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(318-416)

Type III restriction enzyme, res subunit (ResIII)

(116-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

49.89

98.908

0.493

Multiple sequence alignment