Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AAA995_RS00300 Genome accession   NZ_AP028877
Coordinates   50253..51023 (+) Length   256 a.a.
NCBI ID   WP_000616167.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 21P20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 45253..56023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAA995_RS00280 (SP21P20_00530) - 47218..47655 (+) 438 WP_000076479.1 CoA-binding protein -
  AAA995_RS00285 (SP21P20_00540) - 47696..47899 (+) 204 WP_001821609.1 hypothetical protein -
  AAA995_RS00290 (SP21P20_00550) - 47928..48938 (-) 1011 WP_000009158.1 YeiH family protein -
  AAA995_RS00295 (SP21P20_00570) - 49087..50256 (+) 1170 WP_000366345.1 pyridoxal phosphate-dependent aminotransferase -
  AAA995_RS00300 (SP21P20_00580) recO 50253..51023 (+) 771 WP_000616167.1 DNA repair protein RecO Machinery gene
  AAA995_RS00305 (SP21P20_00590) plsX 51020..52012 (+) 993 WP_000717453.1 phosphate acyltransferase PlsX -
  AAA995_RS00310 (SP21P20_00600) - 52018..52251 (+) 234 WP_000136447.1 acyl carrier protein -
  AAA995_RS00315 (SP21P20_00610) - 52297..52587 (+) 291 Protein_55 transposase family protein -
  AAA995_RS00320 (SP21P20_00620) blpU 52790..53020 (+) 231 WP_001093487.1 bacteriocin-like peptide BlpU -
  AAA995_RS00325 - 53023..53148 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  AAA995_RS00330 - 53559..53753 (+) 195 WP_000756776.1 hypothetical protein -
  AAA995_RS00335 (SP21P20_00630) comR 53774..54667 (+) 894 WP_000343888.1 XRE family transcriptional regulator Regulator
  AAA995_RS00340 (SP21P20_00640) - 55210..55506 (+) 297 WP_000837726.1 uberolysin/carnocyclin family circular bacteriocin -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29788.29 Da        Isoelectric Point: 5.8959

>NTDB_id=96443 AAA995_RS00300 WP_000616167.1 50253..51023(+) (recO) [Streptococcus pneumoniae strain 21P20]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQNLTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=96443 AAA995_RS00300 WP_000616167.1 50253..51023(+) (recO) [Streptococcus pneumoniae strain 21P20]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAAATTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

98.828

100

0.988

Multiple sequence alignment