Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NSQ53_RS17355 Genome accession   NZ_CP150164
Coordinates   3275003..3275647 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus sp. PS11(2022) isolate PS11     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3270003..3280647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ53_RS17320 (NSQ53_17320) - 3271195..3271626 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  NSQ53_RS17325 (NSQ53_17325) - 3271626..3271967 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  NSQ53_RS17330 (NSQ53_17330) - 3271960..3273441 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  NSQ53_RS17335 (NSQ53_17335) - 3273447..3273923 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  NSQ53_RS17340 (NSQ53_17340) - 3273923..3274207 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  NSQ53_RS17345 (NSQ53_17345) mnhG 3274191..3274565 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  NSQ53_RS17350 (NSQ53_17350) - 3274604..3274984 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  NSQ53_RS17355 (NSQ53_17355) comA 3275003..3275647 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  NSQ53_RS17360 (NSQ53_17360) comP 3275728..3278037 (-) 2310 WP_213391296.1 histidine kinase Regulator
  NSQ53_RS17365 (NSQ53_17365) comX 3278052..3278219 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  NSQ53_RS17370 (NSQ53_17370) comQ 3278207..3279106 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  NSQ53_RS17375 (NSQ53_17375) degQ 3279291..3279431 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  NSQ53_RS17380 (NSQ53_17380) - 3279653..3279778 (+) 126 WP_003228793.1 hypothetical protein -
  NSQ53_RS17385 (NSQ53_17385) - 3279892..3280260 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=964427 NSQ53_RS17355 WP_003220716.1 3275003..3275647(-) (comA) [Bacillus sp. PS11(2022) isolate PS11]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=964427 NSQ53_RS17355 WP_003220716.1 3275003..3275647(-) (comA) [Bacillus sp. PS11(2022) isolate PS11]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment