Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | NST88_RS12615 | Genome accession | NZ_CP150162 |
| Coordinates | 2461004..2461339 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus sp. PS68 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2456004..2466339
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NST88_RS12595 (NST88_12595) | gcvT | 2456596..2457684 (-) | 1089 | WP_003230205.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| NST88_RS12600 (NST88_12600) | - | 2458126..2459799 (+) | 1674 | WP_003230203.1 | SNF2-related protein | - |
| NST88_RS12605 (NST88_12605) | - | 2459820..2460614 (+) | 795 | WP_003230200.1 | YqhG family protein | - |
| NST88_RS12610 (NST88_12610) | sinI | 2460797..2460970 (+) | 174 | WP_003230187.1 | anti-repressor SinI family protein | Regulator |
| NST88_RS12615 (NST88_12615) | sinR | 2461004..2461339 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| NST88_RS12620 (NST88_12620) | tasA | 2461432..2462217 (-) | 786 | WP_003230183.1 | biofilm matrix protein TasA | - |
| NST88_RS12625 (NST88_12625) | - | 2462281..2462853 (-) | 573 | WP_003230181.1 | signal peptidase I | - |
| NST88_RS12630 (NST88_12630) | tapA | 2462837..2463598 (-) | 762 | WP_003230180.1 | amyloid fiber anchoring/assembly protein TapA | - |
| NST88_RS12635 (NST88_12635) | - | 2463870..2464196 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| NST88_RS12640 (NST88_12640) | - | 2464238..2464417 (-) | 180 | WP_003230176.1 | YqzE family protein | - |
| NST88_RS12645 (NST88_12645) | comGG | 2464488..2464862 (-) | 375 | WP_003230170.1 | ComG operon protein ComGG | Machinery gene |
| NST88_RS12650 (NST88_12650) | comGF | 2464863..2465246 (-) | 384 | WP_003230168.1 | ComG operon protein ComGF | Machinery gene |
| NST88_RS12655 (NST88_12655) | comGE | 2465272..2465619 (-) | 348 | WP_003230165.1 | ComG operon protein 5 | Machinery gene |
| NST88_RS12660 (NST88_12660) | comGD | 2465603..2466034 (-) | 432 | WP_004398628.1 | comG operon protein ComGD | Machinery gene |
| NST88_RS12665 (NST88_12665) | comGC | 2466024..2466320 (-) | 297 | WP_003230162.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=964234 NST88_RS12615 WP_003226345.1 2461004..2461339(+) (sinR) [Bacillus sp. PS68]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=964234 NST88_RS12615 WP_003226345.1 2461004..2461339(+) (sinR) [Bacillus sp. PS68]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |