Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NSQ12_RS16860 Genome accession   NZ_CP150160
Coordinates   3214188..3214832 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus sp. PS95     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3209188..3219832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ12_RS16825 (NSQ12_16825) - 3210378..3210809 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  NSQ12_RS16830 (NSQ12_16830) - 3210809..3211150 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  NSQ12_RS16835 (NSQ12_16835) - 3211143..3212624 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  NSQ12_RS16840 (NSQ12_16840) - 3212630..3213106 (+) 477 WP_029318490.1 Na+/H+ antiporter subunit E -
  NSQ12_RS16845 (NSQ12_16845) - 3213106..3213390 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  NSQ12_RS16850 (NSQ12_16850) mnhG 3213374..3213748 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  NSQ12_RS16855 (NSQ12_16855) - 3213789..3214169 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  NSQ12_RS16860 (NSQ12_16860) comA 3214188..3214832 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  NSQ12_RS16865 (NSQ12_16865) comP 3214913..3217213 (-) 2301 WP_088300729.1 histidine kinase Regulator
  NSQ12_RS16870 (NSQ12_16870) comX 3217225..3217389 (-) 165 WP_015384519.1 competence pheromone ComX -
  NSQ12_RS16875 (NSQ12_16875) - 3217402..3218262 (-) 861 WP_339175206.1 polyprenyl synthetase family protein -
  NSQ12_RS16880 (NSQ12_16880) degQ 3218447..3218587 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  NSQ12_RS16885 (NSQ12_16885) - 3218809..3218934 (+) 126 WP_121549029.1 hypothetical protein -
  NSQ12_RS16890 (NSQ12_16890) - 3219049..3219417 (+) 369 WP_326146021.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=964091 NSQ12_RS16860 WP_003220716.1 3214188..3214832(-) (comA) [Bacillus sp. PS95]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=964091 NSQ12_RS16860 WP_003220716.1 3214188..3214832(-) (comA) [Bacillus sp. PS95]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment