Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   NSQ12_RS02065 Genome accession   NZ_CP150160
Coordinates   376209..376607 (-) Length   132 a.a.
NCBI ID   WP_029317188.1    Uniprot ID   -
Organism   Bacillus sp. PS95     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 371209..381607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ12_RS02035 (NSQ12_02035) - 371786..372466 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  NSQ12_RS02040 (NSQ12_02040) - 372476..373339 (-) 864 WP_160243146.1 transporter substrate-binding domain-containing protein -
  NSQ12_RS02045 (NSQ12_02045) - 373500..373697 (+) 198 WP_160243144.1 hypothetical protein -
  NSQ12_RS02050 (NSQ12_02050) - 373716..374171 (+) 456 WP_160243142.1 RDD family protein -
  NSQ12_RS02055 (NSQ12_02055) - 374253..374585 (+) 333 WP_015252849.1 YckD family protein -
  NSQ12_RS02060 (NSQ12_02060) bglC 374739..376172 (+) 1434 WP_029317189.1 6-phospho-beta-glucosidase -
  NSQ12_RS02065 (NSQ12_02065) nin/comJ 376209..376607 (-) 399 WP_029317188.1 DNA-entry nuclease inhibitor Regulator
  NSQ12_RS02070 (NSQ12_02070) nucA/comI 376634..377083 (-) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  NSQ12_RS02075 (NSQ12_02075) tlpC 377251..378972 (-) 1722 WP_160243140.1 methyl-accepting chemotaxis protein TlpC -
  NSQ12_RS02080 (NSQ12_02080) hxlB 379083..379640 (-) 558 WP_339175779.1 6-phospho-3-hexuloisomerase -
  NSQ12_RS02085 (NSQ12_02085) hxlA 379646..380278 (-) 633 WP_032724921.1 3-hexulose-6-phosphate synthase -
  NSQ12_RS02090 (NSQ12_02090) hxlR 380510..380872 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14951.95 Da        Isoelectric Point: 4.8991

>NTDB_id=964034 NSQ12_RS02065 WP_029317188.1 376209..376607(-) (nin/comJ) [Bacillus sp. PS95]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILLRLNSSETVSSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVLAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=964034 NSQ12_RS02065 WP_029317188.1 376209..376607(-) (nin/comJ) [Bacillus sp. PS95]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAGCTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCTGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

97.727

100

0.977